Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,064,734 – 10,064,870 |
Length | 136 |
Max. P | 0.919468 |
Location | 10,064,734 – 10,064,841 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 87.00 |
Mean single sequence MFE | -27.11 |
Consensus MFE | -21.53 |
Energy contribution | -21.54 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.19 |
Mean z-score | -2.81 |
Structure conservation index | 0.79 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10064734 107 - 22224390 CUUCACUGAAAUUUGCAUAAAUUUGCAUUAUUUUCGGUGAACCGAAAAUCAUAAUGGGCGUGGACAAUGGGCUCAUAAAUUGAGUUUAGCCAA-AAAUAGAAAAAGCC .((((((((((..((((......))))....))))))))))...............(((.(((....((((((((.....)))))))).))).-...........))) ( -28.32) >DroSec_CAF1 1278 107 - 1 CAUCACUGAAAUUUGCAUAAAUUUGCAAAAUUUUCGGUGAACCGAAAAUCAUAAUGGGCGUGGACAAUGGGCUCAUAAAUUGAGUUUAGCCGA-AAAUAGAAGAGGCC ..((((.....((((((......))))))((((((((....))))))))..........))))....((((((((.....))))))))(((..-..........))). ( -29.00) >DroEre_CAF1 865 104 - 1 CAUUACGGAAAUUUGCAUAAAUUUGCAUAAUUUUCGGUGAACCAAAAAUCAUAAUGGGUGUGGACAAUGGGCUCAUAAA----GCUUGCCCAAAAAAUGAAAGAAACC ((((.((((((((((((......)))).)))))))).....(((...(((......))).)))....(((((.......----....)))))...))))......... ( -24.00) >consensus CAUCACUGAAAUUUGCAUAAAUUUGCAUAAUUUUCGGUGAACCGAAAAUCAUAAUGGGCGUGGACAAUGGGCUCAUAAAUUGAGUUUAGCCAA_AAAUAGAAGAAGCC ..(((((((((..((((......))))....)))))))))................(((.(((....((((((((.....)))))))).))).............))) (-21.53 = -21.54 + 0.01)
Location | 10,064,770 – 10,064,870 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 83.99 |
Mean single sequence MFE | -15.89 |
Consensus MFE | -10.93 |
Energy contribution | -12.30 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.06 |
Mean z-score | -1.90 |
Structure conservation index | 0.69 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773469 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10064770 100 + 22224390 CCCAUUGUCCACGCCCAUUAUGAUUUUCGGUUCACCGAAAAUAAUGCAAAUUUAUGCAAAUUUCAGUGAAGCUUC---CUCAACACAAAUAGC--------GCAAAAACAC ....((((.(((..........((((((((....))))))))..((((......)))).......)))..(((..---............)))--------))))...... ( -17.64) >DroSec_CAF1 1314 103 + 1 CCCAUUGUCCACGCCCAUUAUGAUUUUCGGUUCACCGAAAAUUUUGCAAAUUUAUGCAAAUUUCAGUGAUGCUUCCUCCUCAACACAAAUAGC--------GCAAAAACAC ....((((.(((.........(((((((((....)))))))))(((((......)))))......)))..(((.................)))--------))))...... ( -18.53) >DroEre_CAF1 898 108 + 1 CCCAUUGUCCACACCCAUUAUGAUUUUUGGUUCACCGAAAAUUAUGCAAAUUUAUGCAAAUUUCCGUAAUGCUUC---CUCAACCCAAACAGCACAAAAACGCAAAAACAC ...............(((((((((((((((....))))))))..((((......))))......)))))))....---.............((........))........ ( -16.10) >DroYak_CAF1 32410 98 + 1 CCCAUUGUCCACACCCAUUAUGAUAUUCGGUUCACCAAAAAUGAUGCAAAUUUAUGCAAAUUCCCGUGAGGCUUC---CUCAAACGAAA----------AAAAAAAAACAC .........................((((...............((((......))))........(((((...)---))))..)))).----------............ ( -11.30) >consensus CCCAUUGUCCACACCCAUUAUGAUUUUCGGUUCACCGAAAAUUAUGCAAAUUUAUGCAAAUUUCAGUGAUGCUUC___CUCAACACAAAUAGC________GCAAAAACAC .........(((.......(((((((((((....)))))))))))(((......)))........)))........................................... (-10.93 = -12.30 + 1.37)
Location | 10,064,770 – 10,064,870 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 83.99 |
Mean single sequence MFE | -26.53 |
Consensus MFE | -16.96 |
Energy contribution | -16.65 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.26 |
Mean z-score | -1.74 |
Structure conservation index | 0.64 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.580292 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10064770 100 - 22224390 GUGUUUUUGC--------GCUAUUUGUGUUGAG---GAAGCUUCACUGAAAUUUGCAUAAAUUUGCAUUAUUUUCGGUGAACCGAAAAUCAUAAUGGGCGUGGACAAUGGG .....((..(--------(((..(((((((..(---(....((((((((((..((((......))))....))))))))))))...)).)))))..))))..))....... ( -29.60) >DroSec_CAF1 1314 103 - 1 GUGUUUUUGC--------GCUAUUUGUGUUGAGGAGGAAGCAUCACUGAAAUUUGCAUAAAUUUGCAAAAUUUUCGGUGAACCGAAAAUCAUAAUGGGCGUGGACAAUGGG .....((..(--------(((..(((((((..((.(....).(((((((((((((((......))))))..))))))))).))...)).)))))..))))..))....... ( -30.60) >DroEre_CAF1 898 108 - 1 GUGUUUUUGCGUUUUUGUGCUGUUUGGGUUGAG---GAAGCAUUACGGAAAUUUGCAUAAAUUUGCAUAAUUUUCGGUGAACCAAAAAUCAUAAUGGGUGUGGACAAUGGG .((((..(((.(..(((((...((((((((...---..)))....((((((((((((......)))).)))))))).....)))))...))))).).)))..))))..... ( -25.90) >DroYak_CAF1 32410 98 - 1 GUGUUUUUUUUU----------UUUCGUUUGAG---GAAGCCUCACGGGAAUUUGCAUAAAUUUGCAUCAUUUUUGGUGAACCGAAUAUCAUAAUGGGUGUGGACAAUGGG ((((.......(----------(..(((..(((---(...)))))))..))...))))...((..((((...(((((....)))))..........))))..))....... ( -20.02) >consensus GUGUUUUUGC________GCUAUUUGGGUUGAG___GAAGCAUCACGGAAAUUUGCAUAAAUUUGCAUAAUUUUCGGUGAACCGAAAAUCAUAAUGGGCGUGGACAAUGGG .((((..(((................................(((((((((..((((......))))....))))))))).(((..........))))))..))))..... (-16.96 = -16.65 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:48 2006