Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,033,798 – 10,033,912 |
Length | 114 |
Max. P | 0.838028 |
Location | 10,033,798 – 10,033,912 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 74.57 |
Mean single sequence MFE | -24.79 |
Consensus MFE | -14.89 |
Energy contribution | -14.57 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.14 |
Mean z-score | -1.77 |
Structure conservation index | 0.60 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838028 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10033798 114 - 22224390 CC-----UGCUCCUGCUUCAUUUGGUCUUUGUCUUUAUCCUUUUUCUGCAGCUGGGGUCGAGACUUGCCCGUUGAUUGGGCAGAUGGUUUAUUAAAUUUUCGUUCAUUUAAUAUUUCAA .(-----(((.((....(((...(((....(((((.(((((............))))).)))))..)))...)))..)))))).(((..((((((((........))))))))..))). ( -29.10) >DroSec_CAF1 2008 117 - 1 --GCUCCUGUUCCUGCUCCAUUUGGUCUUUGUCUUUAUCCUUUUUCUGCAGCUGGGGUCGCGACUUGCCCGUUGAUUGGGCAGAUGGUUUAUUAAAUUUUCGUUCAUUUAAUAUUUCAA --((..((.(..((((.......((.............)).......))))..).))..))...(((((((.....))))))).(((..((((((((........))))))))..))). ( -26.16) >DroYak_CAF1 2049 86 - 1 ---------------------------------UUUCUCCUUUCUCUGCAGCUGGAGUCGUCCGUUGUCCGUUGCUGGGGCAGAUGGUUUAUUAAAUUUUCGUUCAUUUAAUAUUUCAA ---------------------------------......((.((((.(((((.(((..(....)...)))))))).)))).)).(((..((((((((........))))))))..))). ( -19.10) >consensus _______UG_UCCUGCU_CAUUUGGUCUUUGUCUUUAUCCUUUUUCUGCAGCUGGGGUCGAGACUUGCCCGUUGAUUGGGCAGAUGGUUUAUUAAAUUUUCGUUCAUUUAAUAUUUCAA ...........................................((((......)))).......(((((((.....))))))).(((..((((((((........))))))))..))). (-14.89 = -14.57 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:46 2006