Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,033,516 – 10,033,617 |
Length | 101 |
Max. P | 0.703586 |
Location | 10,033,516 – 10,033,617 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 86.14 |
Mean single sequence MFE | -35.60 |
Consensus MFE | -25.12 |
Energy contribution | -25.62 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.13 |
Mean z-score | -1.77 |
Structure conservation index | 0.71 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.703586 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10033516 101 + 22224390 ACCAUCGGCUAGCCAAGGAAGCUGCUGCCGGAAAAUCGGAAAUCGAAACGGUCCUUGGUGGCGGGACCAAAUUCACUUCCGGCGACGAGCAGCCACAGCUG .....(((((..(....)..(((((((((((((..(((.....)))...((((((.......))))))........)))))))....))))))...))))) ( -35.60) >DroSec_CAF1 1726 101 + 1 ACCAUCGGCUAGCCAAGGAAGCUGCCGCCGGAAAAUCGGAAAUGGAAACGGUCCUUGGUGGCGGGACCAAGUUCACUUCCGGCGACGAGCAGCCACAGCUG .....(((((..(....)..(((((((((((((.....(((..(....)((((((.......))))))...)))..))))))))....)))))...))))) ( -37.00) >DroSim_CAF1 1592 101 + 1 NNNNNNNNNNNNNNNNNGAAGCUGCCGCCGGAAAAUCGGAAAUGGAAACGGUCCUUGGUGGCGGGACCAAGUUCACUUCCGGCGACGAGCAGCCACAGCUG ....................(((((((((((((.....(((..(....)((((((.......))))))...)))..))))))))....)))))........ ( -33.40) >DroYak_CAF1 1749 101 + 1 ACCAUCGGCUAGCCAAGGAAACUGUCGCCGGAAAAUCGGAAAUGGAAACGCUUCUUGGUGGCGGAACCAAGUUCACUGCCGGCGACGAGAAGCCACAGCAG ......((((.....((....))((((((((......(((..(((...((((.......))))...)))..)))....))))))))....))))....... ( -36.40) >consensus ACCAUCGGCUAGCCAAGGAAGCUGCCGCCGGAAAAUCGGAAAUGGAAACGGUCCUUGGUGGCGGGACCAAGUUCACUUCCGGCGACGAGCAGCCACAGCUG ....................(((((((((((((.....(((..(....)((((((.......))))))...)))..))))))))....)))))........ (-25.12 = -25.62 + 0.50)
Location | 10,033,516 – 10,033,617 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 86.14 |
Mean single sequence MFE | -35.78 |
Consensus MFE | -28.93 |
Energy contribution | -29.99 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.10 |
Mean z-score | -1.56 |
Structure conservation index | 0.81 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653516 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10033516 101 - 22224390 CAGCUGUGGCUGCUCGUCGCCGGAAGUGAAUUUGGUCCCGCCACCAAGGACCGUUUCGAUUUCCGAUUUUCCGGCAGCAGCUUCCUUGGCUAGCCGAUGGU .......(((((((.((((.((((((((((..((((((.........)))))).))).)))))))......))))))))))).((((((....)))).)). ( -37.20) >DroSec_CAF1 1726 101 - 1 CAGCUGUGGCUGCUCGUCGCCGGAAGUGAACUUGGUCCCGCCACCAAGGACCGUUUCCAUUUCCGAUUUUCCGGCGGCAGCUUCCUUGGCUAGCCGAUGGU ((((....)))).(((((((((((((((....((((((.........))))))....)))))))(......))))(((((((.....)))).)))))))). ( -40.10) >DroSim_CAF1 1592 101 - 1 CAGCUGUGGCUGCUCGUCGCCGGAAGUGAACUUGGUCCCGCCACCAAGGACCGUUUCCAUUUCCGAUUUUCCGGCGGCAGCUUCNNNNNNNNNNNNNNNNN .......((((((.(((((.((((((((....((((((.........))))))....))))))))......)))))))))))................... ( -34.50) >DroYak_CAF1 1749 101 - 1 CUGCUGUGGCUUCUCGUCGCCGGCAGUGAACUUGGUUCCGCCACCAAGAAGCGUUUCCAUUUCCGAUUUUCCGGCGACAGUUUCCUUGGCUAGCCGAUGGU ..(((((((((....((((((((..((...((((((......))))))..))...((.......))....))))))))((((.....)))))))).))))) ( -31.30) >consensus CAGCUGUGGCUGCUCGUCGCCGGAAGUGAACUUGGUCCCGCCACCAAGGACCGUUUCCAUUUCCGAUUUUCCGGCGGCAGCUUCCUUGGCUAGCCGAUGGU .((((((.((((........((((((((.(..((((((.........))))))..).))))))))......)))).)))))).((((((....)))).)). (-28.93 = -29.99 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:45 2006