Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,030,260 – 10,030,373 |
Length | 113 |
Max. P | 0.811637 |
Location | 10,030,260 – 10,030,373 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 87.54 |
Mean single sequence MFE | -39.33 |
Consensus MFE | -36.66 |
Energy contribution | -36.67 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.10 |
Mean z-score | -1.57 |
Structure conservation index | 0.93 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10030260 113 - 22224390 UUUUAUGUCCCUCGACGCUCUGCGGCGACACGUUGUG------GAUGGGCAGUGCGAGGGAGACGGCACAGACAGCCGAGCGAGAUGGGGCAUGAAGAUUUGGGGGGAAUGGGAACUGG (((((((((((((..(((((.((((((...))))))(------(.((..(.((((...(....).)))).).)).))))))).)).)))))))))))...................... ( -37.90) >DroEre_CAF1 37565 106 - 1 UUUUAUGUCCCUCGACGCUCUGCGGCGACACGUUGUG------GAUAGGUAGUGCGAGGGAGACGGCACAGACAGCAGAGCGAGAUGGGGCGCGAGGAU---GGGGGAAUGGGAA---- ((((((.(((((((.((((((((.((((....)))).------........((((...(....).)))).....))))))))........(....)..)---)))))))))))).---- ( -37.60) >DroYak_CAF1 35026 113 - 1 UUUUAUGUCCCUCGACGCUCUGCGGCGACACGUUGUGGAUGUGGAUGGGGAGUGCGAGGGAGAUGGCACAGACAGCAGAGCGAGAUGGGGCGUGAAGAUU--GGCGGAAUGGGAA---- (((((((((((((..((((((((.....((((((...))))))........((((.(......).)))).....)))))))).)).)))))))))))...--.............---- ( -42.50) >consensus UUUUAUGUCCCUCGACGCUCUGCGGCGACACGUUGUG______GAUGGGCAGUGCGAGGGAGACGGCACAGACAGCAGAGCGAGAUGGGGCGUGAAGAUU__GGGGGAAUGGGAA____ (((((((((((((..((((((((.((((....))))...............((((...(....).)))).....)))))))).)).)))))))))))...................... (-36.66 = -36.67 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:34 2006