Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,131,230 – 1,131,374 |
Length | 144 |
Max. P | 0.949762 |
Location | 1,131,230 – 1,131,340 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 93.30 |
Mean single sequence MFE | -36.66 |
Consensus MFE | -31.68 |
Energy contribution | -31.04 |
Covariance contribution | -0.64 |
Combinations/Pair | 1.09 |
Mean z-score | -1.46 |
Structure conservation index | 0.86 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.847730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1131230 110 - 22224390 ACAGGUG---UCCGCCUGCCGAAAGGCCAACGAAA--CGCACCAGCGACAAUCAGAUGGGCAGAACUGCUCUUGGAGCGAGAGAGAGAUUUUCCAGCAGGUGAGACACUGAACCC ...((((---(((((((((.((((((((.......--(((....))).((......)))))....((.((((((...))))))))...)))))..))))))).))))))...... ( -37.90) >DroSec_CAF1 27900 113 - 1 ACAGGUGUCGUCCGCCUGCCGAAAGGCCAACGAAA--CGCACCAGCGACAAUCAGAUGGGCAGAACUGCUCUUGGAGCAAGAGAGAGAUUUCCCAGCAGGUGAGACACUGAGCCC ...((((((...((((((((....)))........--(((....))).......(.((((.(((.((.((((((...))))))..)).))))))).)))))).))))))...... ( -38.40) >DroSim_CAF1 29345 110 - 1 ACAGGUG---UCCGCCUGCCGAAAGGCCAACGAAA--CGCACCAGCGACAAUCAGAUGGGCAGAACUGCUCUUGGAGCAAGAGAGAGAUUUCCCAGCAGGUGAGACACUGAGCCC ...((((---((((((((((....)))........--(((....))).......(.((((.(((.((.((((((...))))))..)).))))))).)))))).))))))...... ( -39.50) >DroEre_CAF1 29277 110 - 1 ACAGGUG---UCCGCCUGCCGAAAGGCCAACGAAA--CGCACCAGCGACAAUCAGAUGGGCAGAACUGCUCUUGGAGUGAGAGAGAGAUUUCCCAACAGGUGAGAUUCUGAAUCC .((((.(---((((((((((....)))........--(((....))).......(.((((.(((.((.(((((.......))))))).))))))).)))))).)))))))..... ( -34.90) >DroYak_CAF1 28861 110 - 1 ACAGGUG---UCCGCCUGCCGAAAGGCCAACGAAACACGCACCGGCGACAAUCAGAUGGGCAGAACUGCUCUUGGAG--AGAGAGAGAUUUCCCAGCAGGUGAGAUUCUAAAUCC ...((.(---((((((((((....)(((..((.....))....)))..........((((.(((.((.(((((....--.))))))).)))))))))))))).))).))...... ( -32.60) >consensus ACAGGUG___UCCGCCUGCCGAAAGGCCAACGAAA__CGCACCAGCGACAAUCAGAUGGGCAGAACUGCUCUUGGAGCAAGAGAGAGAUUUCCCAGCAGGUGAGACACUGAACCC ...(((....((((((((((....)))....((....(((....)))....)).(.((((.(((.((.(((((.......))))))).))))))).)))))).))......))). (-31.68 = -31.04 + -0.64)
Location | 1,131,268 – 1,131,374 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 92.59 |
Mean single sequence MFE | -34.64 |
Consensus MFE | -28.92 |
Energy contribution | -28.92 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.83 |
Structure conservation index | 0.83 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949762 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1131268 106 - 22224390 -----AC-CCCAUUCAAAACUGAUAGCAAGGGAGGCCCAAACAGGUG---UCCGCCUGCCGAAAGGCCAACGAAA--CGCACCAGCGACAAUCAGAUGGGCAGAACUGCUCUUGGAG -----..-...........(..(.((((..(((.(((......))).---)))(((((((....)))........--(((....)))..........)))).....)))).)..).. ( -33.00) >DroSec_CAF1 27938 109 - 1 -----CC-CUCAUUCAAAACUGAUAGCAAGGGAGGCCCAAACAGGUGUCGUCCGCCUGCCGAAAGGCCAACGAAA--CGCACCAGCGACAAUCAGAUGGGCAGAACUGCUCUUGGAG -----..-....(((((..(((((.((..(((...))).....((((.(((.((...(((....)))...))..)--)))))).))....)))))..(((((....)))))))))). ( -35.30) >DroSim_CAF1 29383 106 - 1 -----CC-CCCAUUCAAAACUGAUAGCAAGGGAGGCCCAAACAGGUG---UCCGCCUGCCGAAAGGCCAACGAAA--CGCACCAGCGACAAUCAGAUGGGCAGAACUGCUCUUGGAG -----..-...........(..(.((((..(((.(((......))).---)))(((((((....)))........--(((....)))..........)))).....)))).)..).. ( -33.00) >DroEre_CAF1 29315 107 - 1 -----CCCCCUAUUCAAAACUGAUAGCAGGGUAGACCCAAACAGGUG---UCCGCCUGCCGAAAGGCCAACGAAA--CGCACCAGCGACAAUCAGAUGGGCAGAACUGCUCUUGGAG -----.......(((((..(((((.((.(((....))).....((((---(.((...(((....)))...))...--.))))).))....)))))..(((((....)))))))))). ( -34.70) >DroYak_CAF1 28897 114 - 1 UUAACCCCCCCAUUCAAAACUGAUAGAAGGGGAGACCCAAACAGGUG---UCCGCCUGCCGAAAGGCCAACGAAACACGCACCGGCGACAAUCAGAUGGGCAGAACUGCUCUUGGAG .........(((.......(((((....(((....))).......((---((.(((.(((....)))...((.....))....))))))))))))..(((((....))))).))).. ( -37.20) >consensus _____CC_CCCAUUCAAAACUGAUAGCAAGGGAGGCCCAAACAGGUG___UCCGCCUGCCGAAAGGCCAACGAAA__CGCACCAGCGACAAUCAGAUGGGCAGAACUGCUCUUGGAG ............(((((..(((((.....((.....))....(((((.....)))))(((....)))..........(((....)))...)))))..(((((....)))))))))). (-28.92 = -28.92 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:06 2006