Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,027,336 – 10,027,456 |
Length | 120 |
Max. P | 0.994811 |
Location | 10,027,336 – 10,027,456 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.78 |
Mean single sequence MFE | -23.23 |
Consensus MFE | -17.48 |
Energy contribution | -17.59 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.37 |
Structure conservation index | 0.75 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.926126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10027336 120 + 22224390 AGCAUAAAUGGUAUUGAGUUAAUGAAUAACUCAAUUUUGGCCUAUUGUUACCCACAACAUAUUGUGCAACAUAUUACUCAUACGCACUGUUGCACCAUAUUGUAUUUAGCGACAACAAAU .((.(((((((((((((((((.....)))))))))....)))..............((((((.((((((((................)))))))).))).)))))))))).......... ( -25.39) >DroSim_CAF1 4656 120 + 1 AGCAUAUAUGAUAUUGAGUUAAUGAAUAACUCAAUUUUGGCUUAUUGCUAUCCACAACAUACUGUGCAACAUAUUACUCAUACGCCCUGUUGCACCAUAUUGUAUUCAGCGACAACAAAU .((..(((..(((((((((((.....))))))))...((((.....)))).............((((((((................))))))))..)))..)))...)).......... ( -24.99) >DroYak_CAF1 31866 107 + 1 -------------UUGAGUUAAUAAAUAACUCAAUUUUGCCUCAUUGUUAUCCGAAACAUGCAUUGCAACAUAUUACGCAUACGCCCUGUUGCACCAAAUUGUAUACAGCGACAACAAAU -------------((((((((.....))))))))..........(((((...((....(((((.(((((((......((....))..)))))))......)))))....))..))))).. ( -19.30) >consensus AGCAUA_AUG_UAUUGAGUUAAUGAAUAACUCAAUUUUGGCUUAUUGUUAUCCACAACAUACUGUGCAACAUAUUACUCAUACGCCCUGUUGCACCAUAUUGUAUUCAGCGACAACAAAU .............((((((((.....)))))))).((((.....(((((.......(((....((((((((................)))))))).....)))....)))))...)))). (-17.48 = -17.59 + 0.11)
Location | 10,027,336 – 10,027,456 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.78 |
Mean single sequence MFE | -34.93 |
Consensus MFE | -29.46 |
Energy contribution | -29.13 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.17 |
Mean z-score | -3.90 |
Structure conservation index | 0.84 |
SVM decision value | 2.51 |
SVM RNA-class probability | 0.994811 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10027336 120 - 22224390 AUUUGUUGUCGCUAAAUACAAUAUGGUGCAACAGUGCGUAUGAGUAAUAUGUUGCACAAUAUGUUGUGGGUAACAAUAGGCCAAAAUUGAGUUAUUCAUUAACUCAAUACCAUUUAUGCU .((((((((..((...(((((((((((((((((.(((......)))...))))))))..)))))))))))..)))))))).....(((((((((.....)))))))))............ ( -38.20) >DroSim_CAF1 4656 120 - 1 AUUUGUUGUCGCUGAAUACAAUAUGGUGCAACAGGGCGUAUGAGUAAUAUGUUGCACAGUAUGUUGUGGAUAGCAAUAAGCCAAAAUUGAGUUAUUCAUUAACUCAAUAUCAUAUAUGCU .((((((((.((((..(((((((((((((((((..((......))....))))))))..)))))))))..)))).))))..))))(((((((((.....)))))))))............ ( -36.90) >DroYak_CAF1 31866 107 - 1 AUUUGUUGUCGCUGUAUACAAUUUGGUGCAACAGGGCGUAUGCGUAAUAUGUUGCAAUGCAUGUUUCGGAUAACAAUGAGGCAAAAUUGAGUUAUUUAUUAACUCAA------------- ..((((((((...((((((..((((......))))..))))))(.(((((((......))))))).).))))))))..........((((((((.....))))))))------------- ( -29.70) >consensus AUUUGUUGUCGCUGAAUACAAUAUGGUGCAACAGGGCGUAUGAGUAAUAUGUUGCACAGUAUGUUGUGGAUAACAAUAAGCCAAAAUUGAGUUAUUCAUUAACUCAAUA_CAU_UAUGCU .((((((((..(((...(((.(((.((((((((..((......))....)))))))).))))))..)))...)))))))).....(((((((((.....)))))))))............ (-29.46 = -29.13 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:32 2006