Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,027,124 – 10,027,240 |
Length | 116 |
Max. P | 0.553500 |
Location | 10,027,124 – 10,027,240 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 76.84 |
Mean single sequence MFE | -31.57 |
Consensus MFE | -17.06 |
Energy contribution | -17.95 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.12 |
Mean z-score | -2.06 |
Structure conservation index | 0.54 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553500 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10027124 116 + 22224390 UAAAUGGAUGGAUUGAGUUAUACAGUUAUGGCUUAAGGGCUUGGCAGGU---UGUUUUCUUGUCUUCACUUAGAGAUGAGGAUUACAAAACGUUUGUUAGCCUGUAGAAGUGCCUUGUA .............(((((((((....)))))))))(((((...((((((---((..((((..((((......))))..))))..((((.....))))))))))))......)))))... ( -30.80) >DroSim_CAF1 4450 116 + 1 UUAAUGGCUGGAUUCAGUUAUAGAGUUAUGGCUUAAGGGCUUGGCAGUU---UGUUUUCUUGUCUUCACUUAGAGAUGAGGAUUACAAAACGUUUGUUAGUCUGUGCAAGUGCCUUGUA ...(((((((....))))))).((((....))))(((((((((((((((---(((.((((..((((......))))..))))..)))))((........)))))).))))).))))... ( -29.90) >DroEre_CAF1 34652 106 + 1 GAAAUGUGUGGAGUGACUUAUAGAGUUACGGCUUAGGGACUUGGCUGUUUGUUGUUUUCGUGUCUUCACUUGGAGAUGCGGAUUACAAAACGU-----AAGCCAAGGAAAU-------- ............(((((((...)))))))..........(((((((.....((((.(((((((((((....)))))))))))..)))).....-----.))))))).....-------- ( -34.00) >consensus UAAAUGGAUGGAUUGAGUUAUAGAGUUAUGGCUUAAGGGCUUGGCAGUU___UGUUUUCUUGUCUUCACUUAGAGAUGAGGAUUACAAAACGUUUGUUAGCCUGUGGAAGUGCCUUGUA .............(((((((((....))))))))).(((((...........(((.((((..((((......))))..))))..)))...........)))))................ (-17.06 = -17.95 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:30 2006