Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,026,835 – 10,026,966 |
Length | 131 |
Max. P | 0.944035 |
Location | 10,026,835 – 10,026,950 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.57 |
Mean single sequence MFE | -24.86 |
Consensus MFE | -16.24 |
Energy contribution | -17.20 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.19 |
Mean z-score | -1.96 |
Structure conservation index | 0.65 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647240 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10026835 115 + 22224390 CUUUUUAUUUUUACUACCUAUAUUUAUCGCAUUUUGAAACAAUUUUUUGUUGUUUGCCCUUUU--GCAAAUAUGUUGCAAUUUCGGCAUCAUAAAAAUGCAAAUGGGUCGACGUGUG--- ...........................(((((.((((((((((.....)))))))((((.(((--(((..((((.(((.......))).))))....)))))).))))))).)))))--- ( -26.60) >DroAna_CAF1 24784 107 + 1 CUCUUUGUU--------AUAUAUUUAUCGUAUUUUGAAACAAUUU-UUGUUGUU----CUUUCGGGGGAAUAUGUUGCAAUUUCAGCAUCAUAAAAAUGCAAAUGUCCUGCCGCGUGUGU ....((((.--------((((((((.(((......(((.((((..-..))))))----)...)))..)))))))).)))).....((((.......))))..((((......)))).... ( -16.30) >DroSim_CAF1 4191 112 + 1 CUUUUUAUU-UUACUCCCUAUAUUUAUAGCAUU-UGAAACAAUUUUUUGUUGUUGGCCCUU-U--GCA-AUAUGUUGCAAUUUCAGCAUCAUAAAAAUGCAAAUGGGUCGACGUGUGU-- .........-..................((((.-...(((((....)))))((((((((((-(--(((-.((((.(((.......))).))))....)))))).))))))))))))..-- ( -28.70) >DroEre_CAF1 34355 113 + 1 CUUUUUAUUUUUACUCCCUAUACUUAUCACAUUUUGAAACAAUU--UUGUUGUUGGCCCUUUU--GCGAAUAUGUUGCAAUUUCGGCAUCAUAAAAAUGCAAAUGGAUCGGCGUGUG--- ...........................(((((.....((((...--.))))((((..((.(((--(((..((((.(((.......))).))))....)))))).))..)))))))))--- ( -22.30) >DroYak_CAF1 31489 116 + 1 CUUUUUAUUUUCACUCCCUAUAUUUAUCGCAUUUUGAAACAAUUUUUUGUUGUUGGCCCUUUU--GCGAAUAUGUUGCAAUUUCGGCAUCAUAAAAAUGCAAAUGGGUCGACGUGUGU-- ...........................(((((.....(((((....)))))((((((((.(((--(((..((((.(((.......))).))))....)))))).))))))))))))).-- ( -30.40) >consensus CUUUUUAUUUUUACUCCCUAUAUUUAUCGCAUUUUGAAACAAUUUUUUGUUGUUGGCCCUUUU__GCGAAUAUGUUGCAAUUUCGGCAUCAUAAAAAUGCAAAUGGGUCGACGUGUGU__ ...........................(((.......(((((....)))))((((((((......(((..((((.(((.......))).))))....)))....)))))))))))..... (-16.24 = -17.20 + 0.96)
Location | 10,026,875 – 10,026,966 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.93 |
Mean single sequence MFE | -17.74 |
Consensus MFE | -6.80 |
Energy contribution | -7.12 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.15 |
Mean z-score | -2.21 |
Structure conservation index | 0.38 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944035 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10026875 91 - 22224390 CUCAAACUGACUCACA---------------------------CACACGUCGACCCAUUUGCAUUUUUAUGAUGCCGAAAUUGCAACAUAUUUGC--AAAAGGGCAAACAACAAAAAAUU ........(((.....---------------------------.....)))(.(((.((((((....((((.(((.......))).))))..)))--))).))))............... ( -18.50) >DroAna_CAF1 24816 97 - 1 CUGCCACACACACACA------------------CACAGGACACACGCGGCAGGACAUUUGCAUUUUUAUGAUGCUGAAAUUGCAACAUAUUCCCCCGAAAG----AACAACAA-AAAUU (((((.(.........------------------............).))))).....(((((.(((((......))))).)))))..........(....)----........-..... ( -14.30) >DroSim_CAF1 4229 93 - 1 CUCAAACUGGCUCACA--------------------CAU---ACACACGUCGACCCAUUUGCAUUUUUAUGAUGCUGAAAUUGCAACAUAU-UGC--A-AAGGGCCAACAACAAAAAAUU .......((((((..(--------------------(..---......)).......((((((....((((.(((.......))).)))).-)))--)-))))))))............. ( -19.80) >DroEre_CAF1 34395 89 - 1 CUCAAACUGGCUCACA---------------------------CACACGCCGAUCCAUUUGCAUUUUUAUGAUGCCGAAAUUGCAACAUAUUCGC--AAAAGGGCCAACAACAA--AAUU ........(((.....---------------------------.....)))(..((.(((((.....((((.(((.......))).))))...))--))).))..)........--.... ( -16.90) >DroYak_CAF1 31529 115 - 1 CUCAAACUUGCACACACUCGCCCAUACUCGCACAUACAG---ACACACGUCGACCCAUUUGCAUUUUUAUGAUGCCGAAAUUGCAACAUAUUCGC--AAAAGGGCCAACAACAAAAAAUU ...................((((...............(---((....)))......(((((.....((((.(((.......))).))))...))--))).))))............... ( -19.20) >consensus CUCAAACUGGCUCACA____________________CA____ACACACGUCGACCCAUUUGCAUUUUUAUGAUGCCGAAAUUGCAACAUAUUCGC__AAAAGGGCCAACAACAAAAAAUU .....................................................(((.(((.......((((.(((.......))).)))).......))).)))................ ( -6.80 = -7.12 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:29 2006