Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,022,688 – 10,022,808 |
Length | 120 |
Max. P | 0.889149 |
Location | 10,022,688 – 10,022,808 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.32 |
Mean single sequence MFE | -36.30 |
Consensus MFE | -33.80 |
Energy contribution | -33.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -1.86 |
Structure conservation index | 0.93 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.889149 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10022688 120 - 22224390 AACGCAGUUUGGUUUUUCAUUUCUCAGUUUCAGUUUCGGUUUUAGCCUCGCCUGUCUGGGAAAGUUAUAGCCAAAGCAGGCCUGCCAAAAUGAAAAAGUGGAGUGUGGGGGUGGUUGGGU ..((((.(..(.((((((((((..(((..........(((....)))..((((((...((..........))...)))))))))...)))))))))).)..).))))............. ( -32.00) >DroEre_CAF1 29849 110 - 1 AACGCAGUGUGGUUUUUCAUUUCUCAGUUUCAGUUUCGGUU-UGGCUUCGCCUGUCUGGGAAAGUUAUAGCCAAAUCAGGCCUGCCAAAAUGAAAAACUGCAGUGUGGG--UG------- ..((((.((..(((((((((((...............((((-(((((.(.(((....)))...)....))))))))).((....)).)))))))))))..)).))))..--..------- ( -40.20) >DroYak_CAF1 26898 111 - 1 AACGCAGUUUGGUUUUUCAUUUCUCAGUUUCAGUUACGGUUCUGGCCUCGUCUGUGUGGGAAAGUUAUAGCCAAAGCAGGCCUGCCAAAAUGAAAAACUGGAGUGUGGG--UA------- ..((((.((..(((((((((((....((.......))(((...(((((.(.((...(((...........))).)))))))).))).)))))))))))..)).))))..--..------- ( -36.70) >consensus AACGCAGUUUGGUUUUUCAUUUCUCAGUUUCAGUUUCGGUU_UGGCCUCGCCUGUCUGGGAAAGUUAUAGCCAAAGCAGGCCUGCCAAAAUGAAAAACUGGAGUGUGGG__UG_______ ..((((.((((((((((((((((((((...(((....(((....)))....))).))))))))......(((......))).........)))))))))))).))))............. (-33.80 = -33.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:20 2006