Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,014,053 – 10,014,168 |
Length | 115 |
Max. P | 0.816074 |
Location | 10,014,053 – 10,014,168 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.71 |
Mean single sequence MFE | -38.25 |
Consensus MFE | -23.09 |
Energy contribution | -23.15 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.15 |
Mean z-score | -2.56 |
Structure conservation index | 0.60 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.816074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10014053 115 + 22224390 GUCAGCCAUCAUGUUAGUCGGCG-----AGAUGGCAAUCGAGUCGCAUUAAAAACUAAUCGCAGCCCAUGCAUGCGGCUCAAAUGAUUAAGCGUUCAAUUUGCCAGCACUCGACAUGCAA (((.(((..(......)..)))(-----((.((((((..(((((((((............(((.....))))))))))))...(((........)))..))))))...))))))...... ( -35.60) >DroAna_CAF1 14778 114 + 1 GU-GGCCA----GUUGGGCGGCGUCGGCAGAUGGCAAUCGGG-CGCAUUAAAAACUAAUCGCAGCCCGUGCAUGCGGCUCAAGUGAUUAAGCGUUCGAUUCGCCGGCUCUCGACAUGCAA ((-.(((.----....))).))(((((.((.(((((((((((-(((.((((..(((..(((((((....)).)))))....)))..)))))))))))))).)))).)).)))))...... ( -46.90) >DroEre_CAF1 21543 115 + 1 GUCAGCCAUCAUGUUGGUCGGCG-----AGAUGGCAAUCGAGCCGCAUUAAAAACUAAUCGCAGCCCAUGCAUGCGGCUCAAAUGAUUAAGCGUUCAAUUUGCCAGCACUCGACAUGCAA (((.((((((.....))).)))(-----((.((((((..(((((((((............(((.....))))))))))))...(((........)))..))))))...))))))...... ( -39.60) >DroYak_CAF1 17583 99 + 1 G----------------UCGACG-----AGAUGGCAAUCGAGUCGCAUUAAAAACUAAUCGCAGUCCAUGCAUGCGGCUCAAAUGAUUAAGCGUUCAAUUUGCCAGCACUCGACAUGCAA (----------------((((.(-----.(.((((((..(((((((((............(((.....))))))))))))...(((........)))..)))))).).))))))...... ( -30.90) >consensus GU_AGCCA____GUUGGUCGGCG_____AGAUGGCAAUCGAGUCGCAUUAAAAACUAAUCGCAGCCCAUGCAUGCGGCUCAAAUGAUUAAGCGUUCAAUUUGCCAGCACUCGACAUGCAA ....................(((.....((.((((((..(((((((((............(((.....))))))))))))...(((........)))..))))))...)).....))).. (-23.09 = -23.15 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:16 2006