Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,010,455 – 10,010,563 |
Length | 108 |
Max. P | 0.500000 |
Location | 10,010,455 – 10,010,563 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 85.05 |
Mean single sequence MFE | -31.33 |
Consensus MFE | -25.66 |
Energy contribution | -26.94 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.04 |
Mean z-score | -1.52 |
Structure conservation index | 0.82 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10010455 108 + 22224390 CACGGCGACAGGUGAGAGAUGUUGCCGCUGGCACACACACACACACACUCUUGCAGUUGGGGCACAGGUGCCAAAACGGUGGGCCAUCAAAGAG-CGACAAAAAAAAAC ((((((((((..(....).)))))))).))...............(.(((((...(((..((((....))))..)))((....))....)))))-.)............ ( -30.70) >DroSec_CAF1 15876 101 + 1 CACGGCGACAGGCGAGAGAUGUUGCCGCUGGCACACACA--CACACACUCUUACUGUUGGGGCACAGGUGCCAAAACGGUGGGCCAUCAAAGAG------AAAAAAAAC ((((((((((..(....).)))))))).)).........--........(((((((((..((((....))))..)))))))))...........------......... ( -32.90) >DroEre_CAF1 16484 101 + 1 CACGGCGACAGGCGAGAGAUGUUGCCGCUGGCACAAACACACACAUGCAGUUGCAGUUGGGGCACAGGUGGCAAAACGGUGGGCCAUCAAAGGAA--------AAAUAA ..((((((((..(....).)))))))).((((.....(((.....(((....)))(((..(.((....)).)..))).))).)))).........--------...... ( -30.40) >consensus CACGGCGACAGGCGAGAGAUGUUGCCGCUGGCACACACACACACACACUCUUGCAGUUGGGGCACAGGUGCCAAAACGGUGGGCCAUCAAAGAG______AAAAAAAAC ..((((((((..(....).)))))))).((((...(((.................(((..((((....))))..))).))).))))....................... (-25.66 = -26.94 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:15 2006