Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,010,006 – 10,010,136 |
Length | 130 |
Max. P | 0.820955 |
Location | 10,010,006 – 10,010,100 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 88.76 |
Mean single sequence MFE | -27.57 |
Consensus MFE | -25.06 |
Energy contribution | -24.88 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.07 |
Mean z-score | -1.61 |
Structure conservation index | 0.91 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820955 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10010006 94 + 22224390 ACACGCACCCUGCUCAACUUUGCCAUCAUUUGUGGUUUUGCAUGUUCCGCGUGCAGCACAUCGCCAAGUGCUGGCAAUAUGGCCACGC-CCCCCC------------- ....((.....((.((...((((((.((((((((((.(((((((.....)))))))...)))).)))))).))))))..))))...))-......------------- ( -27.50) >DroSec_CAF1 15433 95 + 1 ACACGCACCCUGCACAACUUUGCUAUCAUUUGUGGUUUUGCAUGUGCCGCGUGCAGCACAUCGCCAAGUGCUGGCAAUAUGGCCACGCACCCCCC------------- ....((((..((((.((((..((........)))))).)))).)))).(((((((((((........))))))((......))))))).......------------- ( -29.70) >DroEre_CAF1 16048 106 + 1 ACACGCACCCUGCUCAACUUUGCUAUCAUUUGUGGUUUUGCAUGUGCCGCAUGCAGCACAUCGCCAAGUGCUGGCAAUAUGGCCACGC-CCC-CUCACUCCAUCCGCC ....((.............((((((.((((((((((.(((((((.....)))))))...)))).)))))).))))))...(((...))-)..-............)). ( -26.40) >DroYak_CAF1 12845 93 + 1 ACACGCACCCUGCUCAACUUUGCUAUCAUUUGUGGUUUUGCAUGUGCCGCAUGCAGCACAACGCCAAGUGCUGGCAAUAUGGCCACGC-CAC-CC------------- ....((.....))......((((((.((((((..((((((((((.....)))))))...)))..)))))).))))))..((((...))-)).-..------------- ( -26.70) >consensus ACACGCACCCUGCUCAACUUUGCUAUCAUUUGUGGUUUUGCAUGUGCCGCAUGCAGCACAUCGCCAAGUGCUGGCAAUAUGGCCACGC_CCC_CC_____________ ....((.....((.((...((((((.((((((((((.(((((((.....)))))))...)))).)))))).))))))..))))...)).................... (-25.06 = -24.88 + -0.19)
Location | 10,010,034 – 10,010,136 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.76 |
Mean single sequence MFE | -37.85 |
Consensus MFE | -23.30 |
Energy contribution | -24.42 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.06 |
Mean z-score | -1.84 |
Structure conservation index | 0.62 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589475 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10010034 102 - 22224390 GUCGCAGUCUUUUCCUUUUUU-UCGUAGCGGAAAAGA----------------GGGGGG-GCGUGGCCAUAUUGCCAGCACUUGGCGAUGUGCUGCACGCGGAACAUGCAAAACCACAAA .((((.(((.(..((((((((-(((...)))))))))----------------))..))-))(..((.((((((((((...))))))))))))..)..)))).................. ( -39.90) >DroSec_CAF1 15461 101 - 1 UUCGCAGUCUUUUC--UUUUU-UCGAAGCGGCAGAGA----------------GGGGGGUGCGUGGCCAUAUUGCCAGCACUUGGCGAUGUGCUGCACGCGGCACAUGCAAAACCACAAA ...(((.(((((((--(((..-(((...))).)))))----------------))))).)))((((....((((((((...))))))))((((((....))))))........))))... ( -37.00) >DroEre_CAF1 16076 117 - 1 UUCUCAGUCUUUCCUUUUUUUUU-GGAGCGGAAAAGGUCGGGCGGAUGGAGUGAG-GGG-GCGUGGCCAUAUUGCCAGCACUUGGCGAUGUGCUGCAUGCGGCACAUGCAAAACCACAAA (((((.((((..((((((((...-.....))))))))..)))).)).)))(((.(-...-((((((((((((((((((...))))))))))((.....))))).)))))....))))... ( -41.30) >DroYak_CAF1 12873 102 - 1 UUCUCAGUCUUUCAUUUUUUUUUCGCAGCGGAAAAGA----------------GG-GUG-GCGUGGCCAUAUUGCCAGCACUUGGCGUUGUGCUGCAUGCGGCACAUGCAAAACCACAAA ............((((((((((((......)))))))----------------))-)))-((((((((....(((.(((((........))))))))...))).)))))........... ( -33.20) >consensus UUCGCAGUCUUUCCUUUUUUU_UCGAAGCGGAAAAGA________________GG_GGG_GCGUGGCCAUAUUGCCAGCACUUGGCGAUGUGCUGCACGCGGCACAUGCAAAACCACAAA ................(((((((((...)))))))))...................((..((((((((((((((((((...))))))))))((.....))))).)))))....))..... (-23.30 = -24.42 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:14 2006