Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,007,376 – 10,007,485 |
Length | 109 |
Max. P | 0.781932 |
Location | 10,007,376 – 10,007,485 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 92.97 |
Mean single sequence MFE | -27.12 |
Consensus MFE | -25.54 |
Energy contribution | -25.97 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.14 |
Mean z-score | -1.53 |
Structure conservation index | 0.94 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781932 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10007376 109 + 22224390 ACAGGAGUAAUUUCAAAUGCCGGAGGCCAGAGGAGAAAUAAAAAGGAGCUUGUGCUCAGCCUUUUCGGCAUUUUAUGAAUUAUUUCGUAGCUCAUUAACGAAAACACGU ...((((((((((.(((((((((((((......(....)......((((....)))).)))))..))))))))...))))))))))...........(((......))) ( -29.60) >DroSec_CAF1 12815 109 + 1 ACAGGAGUAAUUUCAAAUGCCGGAGGCCAGAGGAGAAAUUAAAAGGAGCUUUUGCUCAGCCUUUUCGGCAUUUUAUGAAUUAUUUCGUAGCUCAUUAAUGAAAACACGU ...((((((((((.(((((((((((((.....((....)).....((((....)))).)))))..))))))))...))))))))))....................... ( -30.80) >DroEre_CAF1 13398 109 + 1 ACAGGAAUAUUUUCAAAUGCCGCAGGCCAGAGGCGAAAUUAAAAGGGGCUUGUGCUCAGCCUUUUCGGCUUUUUAUGAAUUAUUUCGUAGCUCAUUAACAAAAACACGU ....(((....))).((((..(((((((((((((...........((((....)))).))))))..)))))..((((((....)))))))).))))............. ( -23.60) >DroYak_CAF1 10104 109 + 1 ACAGAAAUAUUUUCAAAUGCCGCAGGCCAGACGAGAAAUAAAAAGGAGCUGGUGCUCAGCCUUUUUGGCAUUUUAUGAAUUAUUUCGUAGCUCAUUAACGAAAACACGU ...((((((..(((((((((((.((((......(....)......((((....)))).))))...)))))))...)))).))))))...........(((......))) ( -24.50) >consensus ACAGGAAUAAUUUCAAAUGCCGCAGGCCAGAGGAGAAAUAAAAAGGAGCUUGUGCUCAGCCUUUUCGGCAUUUUAUGAAUUAUUUCGUAGCUCAUUAACGAAAACACGU ...((((((((((.((((((((((((((......)..........((((....)))).)))))..))))))))...))))))))))....................... (-25.54 = -25.97 + 0.44)
Location | 10,007,376 – 10,007,485 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 92.97 |
Mean single sequence MFE | -24.02 |
Consensus MFE | -23.33 |
Energy contribution | -24.14 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.06 |
Mean z-score | -1.23 |
Structure conservation index | 0.97 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511443 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10007376 109 - 22224390 ACGUGUUUUCGUUAAUGAGCUACGAAAUAAUUCAUAAAAUGCCGAAAAGGCUGAGCACAAGCUCCUUUUUAUUUCUCCUCUGGCCUCCGGCAUUUGAAAUUACUCCUGU ..(((.((((....(((((.((.....)).))))).((((((((...(((((((((....)))).................))))).)))))))))))).)))...... ( -25.02) >DroSec_CAF1 12815 109 - 1 ACGUGUUUUCAUUAAUGAGCUACGAAAUAAUUCAUAAAAUGCCGAAAAGGCUGAGCAAAAGCUCCUUUUAAUUUCUCCUCUGGCCUCCGGCAUUUGAAAUUACUCCUGU ..(((.((((....(((((.((.....)).))))).((((((((...(((((((((....)))).................))))).)))))))))))).)))...... ( -25.02) >DroEre_CAF1 13398 109 - 1 ACGUGUUUUUGUUAAUGAGCUACGAAAUAAUUCAUAAAAAGCCGAAAAGGCUGAGCACAAGCCCCUUUUAAUUUCGCCUCUGGCCUGCGGCAUUUGAAAAUAUUCCUGU .(((((((........)))).)))......((((......((((...(((((((((...................).))).))))).))))...))))........... ( -21.01) >DroYak_CAF1 10104 109 - 1 ACGUGUUUUCGUUAAUGAGCUACGAAAUAAUUCAUAAAAUGCCAAAAAGGCUGAGCACCAGCUCCUUUUUAUUUCUCGUCUGGCCUGCGGCAUUUGAAAAUAUUUCUGU ..((((((((....(((((.((.....)).))))).(((((((....(((((((((....)))).................)))))..)))))))))))))))...... ( -25.02) >consensus ACGUGUUUUCGUUAAUGAGCUACGAAAUAAUUCAUAAAAUGCCGAAAAGGCUGAGCACAAGCUCCUUUUAAUUUCUCCUCUGGCCUCCGGCAUUUGAAAAUACUCCUGU ..((((((((....(((((.((.....)).))))).((((((((...(((((((((....)))).................))))).))))))))))))))))...... (-23.33 = -24.14 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:11 2006