Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,006,559 – 10,006,658 |
Length | 99 |
Max. P | 0.609715 |
Location | 10,006,559 – 10,006,658 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 84.93 |
Mean single sequence MFE | -24.11 |
Consensus MFE | -19.00 |
Energy contribution | -19.33 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.78 |
Structure conservation index | 0.79 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10006559 99 - 22224390 UUUUUGCCCUUUU-----------------UUUUGUUUUUGCUGUCAACGCUGCCUG--UCGCGGUUGUAAAAUCAGCGAAAUGUUAGCACUCAGCCAAAAAUAAACAAAAGCAUAUU ........(((((-----------------.(((((((((((((.....((((.(..--((((((((....)))).))))...).))))...))).)))))))))).)))))...... ( -25.50) >DroEre_CAF1 12615 116 - 1 UUUUGGCCCUUUUCGUUUUUUUUUCUGUCUUUUUGUUUUUCCUGUCGACGCUGCCUG--UCGCGGUUGUAAAAUCAGCGAAAUGUUAGCAUUCAGCCAAAAAUAAACAAAAGCAUUUU (((((((...................(((.................)))((((.(..--((((((((....)))).))))...).)))).....)))))))................. ( -21.43) >DroYak_CAF1 9339 110 - 1 UUUUUGCCCUUUUUGUUUUUUUC--------UUUGUUUUUGCUGUCAACGCUGCCUGUGUCGCGGUUGUAAAAUCAGCGAAAUGUUAGCACUCAGCCAAAAAUAAACAAAAGCAUAUU .............(((((((...--------(((((((((((((.....((((.(....((((((((....)))).))))...).))))...))).)))))))))).))))))).... ( -25.40) >consensus UUUUUGCCCUUUU_GUUUUUUU________UUUUGUUUUUGCUGUCAACGCUGCCUG__UCGCGGUUGUAAAAUCAGCGAAAUGUUAGCACUCAGCCAAAAAUAAACAAAAGCAUAUU ...............................(((((((((((((.....((((.(....((((((((....)))).))))...).))))...))).))))))))))............ (-19.00 = -19.33 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:08 2006