Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 10,002,364 – 10,002,480 |
Length | 116 |
Max. P | 0.895645 |
Location | 10,002,364 – 10,002,480 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 82.76 |
Mean single sequence MFE | -26.83 |
Consensus MFE | -18.48 |
Energy contribution | -19.27 |
Covariance contribution | 0.79 |
Combinations/Pair | 1.15 |
Mean z-score | -2.41 |
Structure conservation index | 0.69 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10002364 116 + 22224390 UACCUUUACAUAUUCCAUGCCAUUUUGCAGUAAUACCGCCUUC--UCUGGCAUUGCAGGAAAAUGCUGCAUUUUUUUUUUAACCUCCAAUAUGCUGGGAUAUUUACGAAUAUUUCGUG .........((((((((.((.((.(((.((.......(((...--...)))..(((((.......))))).............)).))).)))))))))))).(((((.....))))) ( -24.70) >DroSec_CAF1 7932 105 + 1 UACCUUUGCAUAUUCCAUGCUAUUUUGCAGUAAUGCCGCCUUC--UCUGGCAUUGCAG-------UUGCAUUU----UUUAAGCUCCAAUAUGCUGGGAUAUUCACGAAUAUUUCGUG ..(((..(((((((....(((....(((((((((((((.....--..)))))))))..-------.))))...----....)))...))))))).))).....(((((.....))))) ( -30.70) >DroEre_CAF1 8430 113 + 1 UACCUUUGCGUACUCCCUGUUAUUUUGCAGUGAUGCCGCCUUCUCUCUGGCAUUU-AAAAAAGUGCAGCAUUU----UUUAAGCUUCAAUAUGCUGGGAUAUUUACGAAUAUUUCGUG ..(((..(((((....((((......))))(((.((.(((........)))..((-((((((........)))----))))))).))).))))).))).....(((((.....))))) ( -25.10) >consensus UACCUUUGCAUAUUCCAUGCUAUUUUGCAGUAAUGCCGCCUUC__UCUGGCAUUGCAG_AAA_UGCUGCAUUU____UUUAAGCUCCAAUAUGCUGGGAUAUUUACGAAUAUUUCGUG ..(((..(((((((...(((......)))(((((((((.........)))))))))...............................))))))).))).....(((((.....))))) (-18.48 = -19.27 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:59 2006