Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,997,887 – 9,997,992 |
Length | 105 |
Max. P | 0.526889 |
Location | 9,997,887 – 9,997,992 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 89.74 |
Mean single sequence MFE | -22.98 |
Consensus MFE | -14.95 |
Energy contribution | -15.20 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.38 |
Structure conservation index | 0.65 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526889 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9997887 105 + 22224390 CAAAAAAACC-CGAUUCCCAUUUGAAUGGCAGAUGGCGGAACAACAACAGCAGGAGUAAGCAAAUCAAAGGUUGGCACACCCUGGAAUUCAUAAAUAAAAUUUAAG .........(-((....(((((((.....))))))))))...........((((.((..((.(((.....))).))..))))))...................... ( -19.10) >DroSec_CAF1 4032 102 + 1 CAAAAAAAAC-CGUUUCCCAUUUGAAUGGCAGAUGGCGGAACAACAAC---AGGAGUAAGCAAAUCAAAGGUUGGCACACCCUGGAAUUCAUAAAUAAAAUUUAAG ..........-.((((((((((((.....))))))).))))).....(---(((.((..((.(((.....))).))..))))))...................... ( -23.30) >DroSim_CAF1 211 103 + 1 CAAAAAAAACCCGUUUCCCAUUUGAAUGGCAGAUGGCGGAACAACAAC---AGGAGUAAGCAAAUCAAAGGUUGGCACACCCUGGAAUUCAUAAAUAAAAUUUAAG ............((((((((((((.....))))))).))))).....(---(((.((..((.(((.....))).))..))))))...................... ( -23.30) >DroEre_CAF1 4171 97 + 1 CAAA-AAACC-CGUUUCCCAUUUGAAUGGCAGAUGGCGGAACAA---C---AGGAGUAAGCCAAUCAAAGGUUGGCCC-ACACGGAGUUCAUAAACAAAUUUAAAA ....-.((((-(((((((((((((.....))))))).)))))..---.---....((..((((((.....))))))..-))..)).)))................. ( -26.20) >consensus CAAAAAAAAC_CGUUUCCCAUUUGAAUGGCAGAUGGCGGAACAACAAC___AGGAGUAAGCAAAUCAAAGGUUGGCACACCCUGGAAUUCAUAAAUAAAAUUUAAG ............((((((((((((.....))))))).))))).................((.(((.....))).)).............................. (-14.95 = -15.20 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:58 2006