Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,994,206 – 9,994,297 |
Length | 91 |
Max. P | 0.881848 |
Location | 9,994,206 – 9,994,297 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 71.40 |
Mean single sequence MFE | -21.95 |
Consensus MFE | -17.46 |
Energy contribution | -16.15 |
Covariance contribution | -1.31 |
Combinations/Pair | 1.35 |
Mean z-score | -1.21 |
Structure conservation index | 0.80 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.881848 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9994206 91 - 22224390 GUGUGUUAACUUGGAAAAGUCGAGAAUCAGGAGUUCGCUGAAACGCUAAUGUUGUUUUUGUUGACUCUGCUCUCGAAUUCCGACCCCUCGU ..........((((((...((((((....((((((.((.(((((((....).)))))).)).))))))..)))))).))))))........ ( -26.40) >DroPse_CAF1 10378 75 - 1 CUCUGUUUGCUUUACGGAGUCGAGAGUCGAAACUUCACCGGAGCGCUAAUGUUGUUUUUGUUGAUUUUGCUCUUG---------------- ((((((.......)))))).((((((.(((((.((.((..((((((....).)))))..)).)))))))))))))---------------- ( -18.90) >DroYak_CAF1 7221 90 - 1 GUGUGUCGACUUGGAAAAGUCGAGAAUCAGGAGUUCGCUGAAACGCUAAUGUUGUUUUUGUUGAUUCUGCUCUCGAAU-CCAACCCCUCGU ......(((.(((((....((((((....((((((.((.(((((((....).)))))).)).))))))..)))))).)-))))....))). ( -23.60) >DroPer_CAF1 10889 75 - 1 CUCUGUUUGCUUUACGGAGUCGAGAGUCGAAACUUCACCGGAGCGCUAAUGUUGUUUUUGUUGAUUUUGCUCUUG---------------- ((((((.......)))))).((((((.(((((.((.((..((((((....).)))))..)).)))))))))))))---------------- ( -18.90) >consensus CUCUGUUUACUUGAAAAAGUCGAGAAUCAAAACUUCACCGAAACGCUAAUGUUGUUUUUGUUGAUUCUGCUCUCG________________ ........((((....))))(((((((..((((((.((.(((((((....).)))))).)).)))))))))))))................ (-17.46 = -16.15 + -1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:57 2006