Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,130,065 – 1,130,165 |
Length | 100 |
Max. P | 0.658228 |
Location | 1,130,065 – 1,130,165 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 87.97 |
Mean single sequence MFE | -26.76 |
Consensus MFE | -21.24 |
Energy contribution | -21.28 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.57 |
Structure conservation index | 0.79 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658228 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1130065 100 + 22224390 UCUACUGCGUCUUCGACUGUCGGCUGU---UGUAGCGAACUGCCAACAAUGGGCAUCAUUCAUCGCUCAUUCACUGGCACUCGCUCCGUGGCUCUGUGACUCU ........(((...))).((((((..(---.(.(((((..(((((..(((((((..........)))))))...))))).)))))).)..)))....)))... ( -28.10) >DroSec_CAF1 26702 92 + 1 UCUACUGCGUCUUCGACUGUCGGCUGU---UGUAGUGAACUGCCAACAAUGGGCAUCAUUCAUCGCUCAUUCACUGGCACUCGGGCCGUGGCUC--------U ....(..((.((.(((.((((((..((---(((((....))).))))(((((((..........)))))))..)))))).))))).))..)...--------. ( -28.60) >DroSim_CAF1 28148 92 + 1 UCUACUGCGUCUUCGACUGUCGGCUGU---UGUAGUGAACUGCCAACAAUGGGCAUCAUUCAUCGCUCAUUCACUGGCACUCGUUCCGUGGCUC--------U ....(..((....(((.((((((..((---(((((....))).))))(((((((..........)))))))..)))))).)))...))..)...--------. ( -27.20) >DroEre_CAF1 27995 84 + 1 UCUACUGCGUCUUCGACUGCCGGCUGU---UGUAGUGAACUGCCAACAAUGGGCAUCAUUCAUCGCUCAUUCACUGGCACUCGUU--------C--------U .............(((.((((((..((---(((((....))).))))(((((((..........)))))))..)))))).)))..--------.--------. ( -24.90) >DroYak_CAF1 27571 87 + 1 UCUACUGCGUCUCCGACUGUCGGCUGUUGUUGUAGUGAACUGCCAACAAUGGGCAUCAUUCAUCGCUCAUUCACUGGCACUCGUU--------C--------U .((((.(((.(.(((.....)))..).))).)))).(((((((((..(((((((..........)))))))...)))))...)))--------)--------. ( -25.00) >consensus UCUACUGCGUCUUCGACUGUCGGCUGU___UGUAGUGAACUGCCAACAAUGGGCAUCAUUCAUCGCUCAUUCACUGGCACUCGUUCCGUGGCUC________U .............(((.((((((.((.....(..(((((.((((.......))))...)))))..).....)))))))).))).................... (-21.24 = -21.28 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:04 2006