Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,977,143 – 9,977,261 |
Length | 118 |
Max. P | 0.853624 |
Location | 9,977,143 – 9,977,261 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 75.70 |
Mean single sequence MFE | -25.58 |
Consensus MFE | -12.90 |
Energy contribution | -12.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.29 |
Mean z-score | -2.30 |
Structure conservation index | 0.50 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9977143 118 + 22224390 AACGAGGACAUCGAGGACAGGCGAGAAAUUGUGGCCAUAAUGAAAAUGGCUAGGAAAAUUAGUCAAAUAUAAUGGCAGUUGUUUGUUUGUUUGUUCUUUAAAGGUUAAUUGCCAGAUU ..(((.....)))((((((((((((((((....(((((.(((....(((((((.....)))))))..))).)))))....)))).)))))))))))).....(((.....)))..... ( -31.70) >DroSec_CAF1 22508 97 + 1 -------------AGGACAGGCGAGAAAUUGUGACCAUAAUGAAAAUGGUUAGGCAAAUUAGUCAAAUAUAAUGGCAGUUGUU--------UGUUCUUUAAAGGUUAAUGGCCAGAUU -------------(((((((((((....((((((((((.......))))))..))))....((((.......))))..)))))--------)))))).....(((.....)))..... ( -23.00) >DroEre_CAF1 9787 102 + 1 AGUUC---GAUCAAC-----GCCAUUAAGGAACGCCAUAAUGAAAAUGGUCAAGAGAAUUAGUCAAAUAUAAUGACAGUUGCU--------UGUUCUUUAAAGGUUAAUUGCCAGAUU ...((---...(((.-----(((.((((((((((((((.......)))))...(((((((.((((.......)))))))).))--------)))))))))).)))...)))...)).. ( -22.10) >DroYak_CAF1 10076 107 + 1 AACUC---AAUCGAAUACAGGCGAAAAAUUGUGGCCAUUACGCAAAUGGUCAUGAAAAUUAGUCAAAUAUAAUGACAGUUGUU--------UGUUCUUUAAAGGUUAAUUGCCAGAUU .....---((((((..((((((((....(..((((((((.....))))))))..)......((((.......))))..)))))--------)))))......(((.....))).)))) ( -25.50) >consensus AACUC____AUCGAGGACAGGCGAGAAAUUGUGGCCAUAAUGAAAAUGGUCAGGAAAAUUAGUCAAAUAUAAUGACAGUUGUU________UGUUCUUUAAAGGUUAAUUGCCAGAUU ...................(((.........(((((((.......))))))).........((((.......))))..................................)))..... (-12.90 = -12.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:56 2006