Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,976,866 – 9,976,956 |
Length | 90 |
Max. P | 0.554655 |
Location | 9,976,866 – 9,976,956 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 83.54 |
Mean single sequence MFE | -25.80 |
Consensus MFE | -16.05 |
Energy contribution | -17.47 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.17 |
Mean z-score | -2.40 |
Structure conservation index | 0.62 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554655 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9976866 90 + 22224390 AAAGUUUCCUUCUUUUGGCUGCGAGCAAAGUUGCUGUCAAGAGGAGAAACUUGGCUUUGACUUUUGGUUUU----AUGUACCAAAAAUGGCCAA .(((((((.((((((((((.((((......)))).)))))))))))))))))((((.....(((((((...----....)))))))..)))).. ( -33.80) >DroPse_CAF1 34222 87 + 1 ---GAUUUCUCCUUUUGC-U-CGGAAAAAUUUGCUGG--AAAGGACAAACUUGGCUUUGACUUUCGGUUUUCGUGACUUACCAAAAAUGGGCAA ---(((((.(((......-.-.))).)))))((((.(--((((..((((......)))).)))))(((...........))).......)))). ( -15.10) >DroSec_CAF1 22226 90 + 1 AAAGUUUCCUUCUUUUGGCUGCGAGCAAAGUUGCUGUCAAGAGGAGAAACUUGGCUUUGACUUUUGGUUUU----AUGUACCAAAAAUGGCCAA .(((((((.((((((((((.((((......)))).)))))))))))))))))((((.....(((((((...----....)))))))..)))).. ( -33.80) >DroEre_CAF1 9513 90 + 1 AAAGUUUCCUUCUUUUGGCUGCGAGCAAAGUUGCUGUCAAGAGGAGAAACUUGGCUUUGACUUUUGGUUUU----AUGUACGAAAAAUGGCCAA .(((((((.((((((((((.((((......)))).)))))))))))))))))((((.....((((.((...----....)).))))..)))).. ( -29.40) >DroYak_CAF1 9786 90 + 1 AAAGUUUCCUUCUUUUGGCUGCGAGCAAAGUUGCUGUCAAGAGGAGAAACUUGGCUUUGACUUUUGGUUUU----AUGUACGAGAAAUGGGCAA .(((((((.((((((((((.((((......)))).))))))))))))))))).((((....((((.((...----....)).))))..)))).. ( -27.40) >DroPer_CAF1 34975 87 + 1 ---GAUUUCUCCUUUUGC-U-CGGAAAAAUUUGCUAG--AAAGGACAAACUUGGCUUUGACUUUCGGUUUUCGUGACUUACCAAAAAUGGGCAA ---(((((.(((......-.-.))).)))))((((.(--((((..((((......)))).)))))(((...........))).......)))). ( -15.30) >consensus AAAGUUUCCUUCUUUUGGCUGCGAGCAAAGUUGCUGUCAAGAGGAGAAACUUGGCUUUGACUUUUGGUUUU____AUGUACCAAAAAUGGCCAA ...(((((.((((((((((.((((......)))).))))))))))))))).((.((.....(((((((...........)))))))..)).)). (-16.05 = -17.47 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:55 2006