Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,974,806 – 9,974,913 |
Length | 107 |
Max. P | 0.736312 |
Location | 9,974,806 – 9,974,913 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 76.76 |
Mean single sequence MFE | -19.27 |
Consensus MFE | -2.52 |
Energy contribution | -3.81 |
Covariance contribution | 1.29 |
Combinations/Pair | 1.07 |
Mean z-score | -1.67 |
Structure conservation index | 0.13 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.736312 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9974806 107 - 22224390 UACAACCGCAAAAACCGAAACUAAA-CAGCAGUGCAACAAUUUCAGCGGACCAAAU-UCUGCACUCCAAAAUGGACAUGAAAUUAGUUUUCUAUUUUC-GGCCAAAAA---GU .....(((.((((...((((((((.-..((...)).....((((((((((......-)))))..(((.....)))..)))))))))))))...)))))-)).......---.. ( -20.40) >DroSec_CAF1 20122 107 - 1 UACAACCGCAAAUACCGAAACUAAACCAGCAGUGCAACAAUUUCAGCGAACCAAAU-UCUGCACUCCAAAAUGGACACGAAAUUAGUU-UCUAUUUCU-GGCCAAAAA---GU .....(((.(((((..((((((((.......(((((..(((((.........))))-).)))))(((.....))).......))))))-))))))).)-)).......---.. ( -18.50) >DroEre_CAF1 7468 107 - 1 UACAACCGCAAAAACCGAAACUAAA-CAGCAGUGCAACAAUUUGUACGAGCAAAAUUUCUGCAUUCCAAAAUGGACGUGAAAUUAGUU-UCUAAUUUU-GGCCAAAAA---GU ........(((((...((((((((.-..((.((((((....))))))..))....((((.((..(((.....))).))))))))))))-))...))))-)........---.. ( -21.50) >DroYak_CAF1 7730 93 - 1 UACAACCGCAAAACCCGAAACUAAA-CAGCAGAGCAAAAAAUUUC---AAUGAAAUUUCA--AU---------UACAUGAAAUUAGUU-UCCAUUUCU-CGCCAAAAA---GU ................((((((((.-...((.......(((((((---...)))))))..--..---------....))...))))))-)).......-.........---.. ( -9.26) >DroAna_CAF1 10335 109 - 1 CACAACCGCAAAAACCGAAACUAAA-CAGCAG--CAAUAAUGCCGGCGAGCAAAAUUGUUGAGCGCCGAAAUGGACAUGGAAUUAGUU-UCUGUAUCUCGGCCAAGAGUUUGU .......(((((.((.((((((((.-..(((.--......)))(((((..(((.....)))..)))))..............))))))-)).))..(((......)))))))) ( -26.70) >consensus UACAACCGCAAAAACCGAAACUAAA_CAGCAGUGCAACAAUUUCAGCGAACAAAAUUUCUGCACUCCAAAAUGGACAUGAAAUUAGUU_UCUAUUUCU_GGCCAAAAA___GU ................((((((((....((((..........................))))..(((.....))).......)))))).))...................... ( -2.52 = -3.81 + 1.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:52 2006