Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,972,673 – 9,972,780 |
Length | 107 |
Max. P | 0.846403 |
Location | 9,972,673 – 9,972,780 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 95.64 |
Mean single sequence MFE | -31.62 |
Consensus MFE | -29.62 |
Energy contribution | -30.50 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.07 |
Mean z-score | -1.48 |
Structure conservation index | 0.94 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9972673 107 + 22224390 AAAUGCAUGCUACUAACUCCACGACCGCAGGUGUACUUUUGCGGCAGCGAGAGUGAGACGGCUGUCAUCGCAGUCGUUGCAUGUGUAAUUUGCUGAAUUUUUAAUUA ..((((((((.....(((((.(..(((((((......)))))))..).).))))..(((((((((....)))))))))))))))))..................... ( -36.50) >DroSec_CAF1 18072 107 + 1 AAAUGCAUGCUACUAACUCCACGACCGCAGGUGUACUUUUGCGGCAGCGAGAGUGAGACGGCUGUCAUCGCAGUCGUUGCAUGUGUAAUUUGCGGAAUUUUUAAUUA ..((((((((.....(((((.(..(((((((......)))))))..).).))))..(((((((((....)))))))))))))))))..................... ( -36.50) >DroEre_CAF1 5472 107 + 1 AAGUGCAUGCUACUAACUCCACGACCGCAGGUGUACCCUUACGGCAGCGAGAGUGAGACGGCUGUCAACGCAGUCGUUGCAUGUGUAAUUUGCUGAAUUUUUAAUUA ..(..(((((.....(((((.(..(((.(((.....)))..)))..).).))))..(((((((((....))))))))))))))..)..................... ( -31.60) >DroYak_CAF1 5652 107 + 1 AAAUGCAUACUACUAACUCCACGACCGCAGGUGUACUUUUACGACAACGAGAGUGAGACGGCUGUCAUCGCAGUCGUUGCAUGUGUAAUUUGCUGAAUUUUUAAUUA ...................(((((..(((.((((((((((........))))))..(((((((((....))))))))))))).)))...))).))............ ( -21.90) >consensus AAAUGCAUGCUACUAACUCCACGACCGCAGGUGUACUUUUACGGCAGCGAGAGUGAGACGGCUGUCAUCGCAGUCGUUGCAUGUGUAAUUUGCUGAAUUUUUAAUUA ..(..(((((.....(((((.(..(((((((......)))))))..).).))))..(((((((((....))))))))))))))..)..................... (-29.62 = -30.50 + 0.88)
Location | 9,972,673 – 9,972,780 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 95.64 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -26.81 |
Energy contribution | -26.00 |
Covariance contribution | -0.81 |
Combinations/Pair | 1.16 |
Mean z-score | -1.97 |
Structure conservation index | 0.89 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9972673 107 - 22224390 UAAUUAAAAAUUCAGCAAAUUACACAUGCAACGACUGCGAUGACAGCCGUCUCACUCUCGCUGCCGCAAAAGUACACCUGCGGUCGUGGAGUUAGUAGCAUGCAUUU ........................(((((.(((((.((.......)).)))..((((.(((.((((((..........)))))).)))))))..)).)))))..... ( -30.00) >DroSec_CAF1 18072 107 - 1 UAAUUAAAAAUUCCGCAAAUUACACAUGCAACGACUGCGAUGACAGCCGUCUCACUCUCGCUGCCGCAAAAGUACACCUGCGGUCGUGGAGUUAGUAGCAUGCAUUU ........................(((((.(((((.((.......)).)))..((((.(((.((((((..........)))))).)))))))..)).)))))..... ( -30.00) >DroEre_CAF1 5472 107 - 1 UAAUUAAAAAUUCAGCAAAUUACACAUGCAACGACUGCGUUGACAGCCGUCUCACUCUCGCUGCCGUAAGGGUACACCUGCGGUCGUGGAGUUAGUAGCAUGCACUU ........................(((((.(((((.((.......)).)))..((((.(((.((((((.((.....)))))))).)))))))..)).)))))..... ( -32.40) >DroYak_CAF1 5652 107 - 1 UAAUUAAAAAUUCAGCAAAUUACACAUGCAACGACUGCGAUGACAGCCGUCUCACUCUCGUUGUCGUAAAAGUACACCUGCGGUCGUGGAGUUAGUAGUAUGCAUUU ..............(((.(((((..((...(((((((((..((((((............))))))(((....)))...)))))))))...))..))))).))).... ( -28.00) >consensus UAAUUAAAAAUUCAGCAAAUUACACAUGCAACGACUGCGAUGACAGCCGUCUCACUCUCGCUGCCGCAAAAGUACACCUGCGGUCGUGGAGUUAGUAGCAUGCAUUU ........................(((((.(((((.((.......)).)))..((((.(((.((((((..........)))))).)))))))..)).)))))..... (-26.81 = -26.00 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:47 2006