Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,971,141 – 9,971,232 |
Length | 91 |
Max. P | 0.983009 |
Location | 9,971,141 – 9,971,232 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 72.88 |
Mean single sequence MFE | -24.23 |
Consensus MFE | -17.04 |
Energy contribution | -16.97 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.20 |
Mean z-score | -1.90 |
Structure conservation index | 0.70 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.983009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9971141 91 + 22224390 -------------------------AAAUUUACCUGUAGGUCAGUGUCUAAUAUUGCUGACUUACCCGUUCUGUUUGGCCCGUUGCGUUUGCUGAACUGAUUGCUAUUCUUAUAUA -------------------------..........(((((((((((........))))))))))).((.((.(((..((...........))..))).)).))............. ( -20.10) >DroSec_CAF1 11555 91 + 1 -------------------------CAAAAUACCUGUAGGUCAGUGUCUAAUAUUGCUGACUUACCCGUUUUGUUUGGUUUGUUGCAUUUGCUGAACUGAUUGCUUUUCCUAUAUA -------------------------((((((....(((((((((((........)))))))))))..)))))).(..((((...((....)).))))..)................ ( -20.90) >DroEre_CAF1 3962 115 + 1 UAAUAUUGGUGCCACUGCAAACAGACAAAAGACCUGUAGGUCAGUGUCCACUAUUGCUGACUUACUUGUUUUGUUUAUCUUGUUGCGUUUGCUGAACUGAUUGCUAUUCCU-UAUA ....((..((..((..((((((.((((((((((..(((((((((((........)))))))))))..))))).......)))))..)))))))).))..))..........-.... ( -30.21) >DroYak_CAF1 4005 116 + 1 UAAUAUUUGUGGCACUUCAAACAUACAAAACUCCUGUAGGUUAGUGUCUAAUAUGACUUACUUGCCCGUUUUGUUUAGCUUGUUGCGUUUGCUGAACUGAUUGCUAUUUCUAUAUA ..((((..((((((..(((.......(((((....((((((....(((......)))..))))))..)))))(((((((...........)))))))))).))))))....)))). ( -25.70) >consensus _________________________CAAAAUACCUGUAGGUCAGUGUCUAAUAUUGCUGACUUACCCGUUUUGUUUAGCUUGUUGCGUUUGCUGAACUGAUUGCUAUUCCUAUAUA ...................................(((((((((((........)))))))))))..((...(((((((...........))))))).....))............ (-17.04 = -16.97 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:45 2006