Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,964,215 – 9,964,312 |
Length | 97 |
Max. P | 0.761044 |
Location | 9,964,215 – 9,964,312 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 91.75 |
Mean single sequence MFE | -19.63 |
Consensus MFE | -18.93 |
Energy contribution | -18.27 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.16 |
Mean z-score | -1.57 |
Structure conservation index | 0.96 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761044 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9964215 97 - 22224390 CUCCACUCCGCUCAACGAGCAUGUUGUACGUGGUGCUUGUCAAACAAAUGCUACAACAGCAGCAGCAACAUCAACCAUGACAAACAGCAAAAUAAAA .........((((...)))).((((((.((((((...(((........((((.....))))......)))...))))))....))))))........ ( -21.54) >DroEre_CAF1 26738 97 - 1 CCCCUCUCCGCCAAACGAGUGUGUUGUACGUGGUGCUUGUCAAACAAAUGCUACAACAGCGGCAGCAGCAUCAACCAUGACAAACAGCAAAAUAAAA .....(((........)))(((.((((.((((((...(((........(((..(....)..)))...)))...))))))))))...)))........ ( -18.50) >DroYak_CAF1 26697 97 - 1 CCACUCUCCGACAAACGAGCAUGUUGUACGUGGUGCUUGUCAAACAAAUGCUACAAUAGCGGCAGCAACAUCAACCAUGACAAACAGCAAAACAAAA ..................((.((((((.((((((...(((........(((((...)))))......)))...)))))))).))))))......... ( -18.84) >consensus CCCCUCUCCGCCAAACGAGCAUGUUGUACGUGGUGCUUGUCAAACAAAUGCUACAACAGCGGCAGCAACAUCAACCAUGACAAACAGCAAAAUAAAA ..................((...((((.((((((...(((........((((.....))))......)))...))))))))))...))......... (-18.93 = -18.27 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:41 2006