Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,963,627 – 9,963,740 |
Length | 113 |
Max. P | 0.958584 |
Location | 9,963,627 – 9,963,740 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 70.17 |
Mean single sequence MFE | -29.34 |
Consensus MFE | -20.14 |
Energy contribution | -22.07 |
Covariance contribution | 1.92 |
Combinations/Pair | 1.11 |
Mean z-score | -1.44 |
Structure conservation index | 0.69 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958584 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9963627 113 - 22224390 UGUAAUGAUGCUUCC-------AGCCAAUAAUAGUAUUCGUACCACUGUGCCACUUGGACCACAUCCAAGCGAGGUGAAGAAGAUUUACGCUGGAGAAAGUGGGGAAAAGGGAGCAGAAG ........(((((((-------.((.((((....)))).)).(((((...(((((((((.....))))))....(((((.....)))))..)))....)))))......))))))).... ( -31.50) >DroEre_CAF1 26269 103 - 1 UGUAAUCCUGUUUCCUGUAAUCUCCUAAUAACGAGUUUCGAACCACUGUGC----------------AAGCGAGGCGGAGAAGAAUUACACUGGAGAAAGUGG-GAAAAGGGAGCAGAAG (((..((((.(((((..(..(((((..........((((...((.((.((.----------------...)).)).)).)))).........)))))..)..)-)))).))))))).... ( -27.21) >DroYak_CAF1 26172 111 - 1 UGUAAUACUGCUCC--------ACUGAAUAAUAGGAUUCAAACCACUGUGCACUUUGGACCACAUCCAAGCGAGGUGGGGAAGAAUUGCACUGGAGAAAGUGG-GUAAAGGGAGAAGAGA .......((.((((--------..(((((......)))))..((((((((((.(((...((((.((.....)).))))....))).))))).......)))))-......)))).))... ( -29.31) >consensus UGUAAUACUGCUUCC_______ACCCAAUAAUAGGAUUCGAACCACUGUGC___UUGGACCACAUCCAAGCGAGGUGGAGAAGAAUUACACUGGAGAAAGUGG_GAAAAGGGAGCAGAAG .......((((((((.....................(((...(((((.(((...(((((.....)))))))).))))).)))......((((......)))).......))))))))... (-20.14 = -22.07 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:40 2006