Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,961,581 – 9,961,671 |
Length | 90 |
Max. P | 0.854841 |
Location | 9,961,581 – 9,961,671 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 81.52 |
Mean single sequence MFE | -18.97 |
Consensus MFE | -12.72 |
Energy contribution | -12.39 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.15 |
Mean z-score | -2.17 |
Structure conservation index | 0.67 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854841 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9961581 90 - 22224390 CAGCUGUUGUUCCGGAUCUCCACUAUUCUAUUCUAUAUAC-CUUGAUUCUUUUGUUACU-----GAAAAUUGAUUAGGUUCUUCCCGAGCAGCUGC ((((((((.....((....))...................-(((((((..(((......-----..)))..))))))).........)))))))). ( -17.60) >DroEre_CAF1 24167 88 - 1 CAGCUGUUGUUCCGGAUCUCCCCUAUUC-----UAUACAU-UUUGAUUCUUUUGUUACUAUACAAAAAAAUGAUUUGGUUCUG-CCGAGCAGCUG- ((((((((((.(((((((..........-----....(..-...)(((.((((((......)))))).))))))))))....)-)..))))))))- ( -19.20) >DroYak_CAF1 24082 85 - 1 CAGCUGUUGUUCCGGAUCUUCUCUACUC-----UAUAUUUUUUUGAUUCUUUUGUUACU-----GAAAAUUGAUUAGAUUCUUCCCGAGCAGCUG- (((((((...((.(((.....((((.((-----...((((((.((((......))))..-----)))))).)).))))....))).)))))))))- ( -20.10) >consensus CAGCUGUUGUUCCGGAUCUCCACUAUUC_____UAUAUAU_UUUGAUUCUUUUGUUACU_____GAAAAUUGAUUAGGUUCUUCCCGAGCAGCUG_ ((((((((.....((....))....................(((((((..(((.............)))..))))))).........)))))))). (-12.72 = -12.39 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:37 2006