Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,961,131 – 9,961,251 |
Length | 120 |
Max. P | 0.724981 |
Location | 9,961,131 – 9,961,251 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -30.33 |
Consensus MFE | -28.82 |
Energy contribution | -28.93 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -1.63 |
Structure conservation index | 0.95 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608403 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9961131 120 + 22224390 GUGUCUGCCCAAAUAGUUAAAGGGCAAAAUAAAUAAACGUCGUCGUCGGUCGACAAAUGUGACGACAACGCCGGCAAAGAAGAAACUCUUGCCUAUAACGAUGUGCCGAUAAUGAAAGAG .(((((((((...........)))))..........(((((((.((((.((.((....))))))))......(((((.((......)))))))....)))))))...))))......... ( -30.90) >DroEre_CAF1 23720 120 + 1 GUGUCUGCCCAAAUAGUUAAAGGGCAAAAUAAAUAAACGUCGUUGUCGGUCGACAAAUGUGACGACAACGCCGACGAAGAAGAAACUCUUGCCUAUAACGAUGUGCCGAUAAUGAAAGAG .((((.((.((....((((..((((............((.((((((((.((.((....)))))))))))).))...((((......)))))))).))))..)).)).))))......... ( -30.50) >DroYak_CAF1 23647 120 + 1 GUGUCUGCCCAAAUAGUUAAAGGGCAAAAUAAAUAAACGUCGUUGUCGGUCGACAAAUGUGACGACAAUGCCGACGAAGAAGAAACUCUUGCCUAUAACGAUGUGCCGAUAAUGAAAGAG .((((.((.((....((((..((((............(((((((((((.((.((....))))))))))...)))))((((......)))))))).))))..)).)).))))......... ( -29.60) >consensus GUGUCUGCCCAAAUAGUUAAAGGGCAAAAUAAAUAAACGUCGUUGUCGGUCGACAAAUGUGACGACAACGCCGACGAAGAAGAAACUCUUGCCUAUAACGAUGUGCCGAUAAUGAAAGAG .((((.((.((....((((..((((............((.((((((((.((.((....)))))))))))).))...((((......)))))))).))))..)).)).))))......... (-28.82 = -28.93 + 0.11)
Location | 9,961,131 – 9,961,251 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -30.83 |
Consensus MFE | -28.04 |
Energy contribution | -27.93 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -2.01 |
Structure conservation index | 0.91 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724981 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9961131 120 - 22224390 CUCUUUCAUUAUCGGCACAUCGUUAUAGGCAAGAGUUUCUUCUUUGCCGGCGUUGUCGUCACAUUUGUCGACCGACGACGACGUUUAUUUAUUUUGCCCUUUAACUAUUUGGGCAGACAC ............(((((....((.....))(((((....))))))))))(((((((((((.............)))))))))))........(((((((...........)))))))... ( -34.02) >DroEre_CAF1 23720 120 - 1 CUCUUUCAUUAUCGGCACAUCGUUAUAGGCAAGAGUUUCUUCUUCGUCGGCGUUGUCGUCACAUUUGUCGACCGACAACGACGUUUAUUUAUUUUGCCCUUUAACUAUUUGGGCAGACAC (((((...((((.(((.....)))))))..)))))..........((((.((((((((((((....)).)).)))))))).)............(((((...........)))))))).. ( -30.20) >DroYak_CAF1 23647 120 - 1 CUCUUUCAUUAUCGGCACAUCGUUAUAGGCAAGAGUUUCUUCUUCGUCGGCAUUGUCGUCACAUUUGUCGACCGACAACGACGUUUAUUUAUUUUGCCCUUUAACUAUUUGGGCAGACAC ...........((.((.((..((((..(((((((..........(((((...((((((((((....)).)).)))))))))))........)))))))...))))....)).)).))... ( -28.27) >consensus CUCUUUCAUUAUCGGCACAUCGUUAUAGGCAAGAGUUUCUUCUUCGUCGGCGUUGUCGUCACAUUUGUCGACCGACAACGACGUUUAUUUAUUUUGCCCUUUAACUAUUUGGGCAGACAC ....................((((...((((((((....))))).)))...(((((((((((....)).)).))))))))))).........(((((((...........)))))))... (-28.04 = -27.93 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:34 2006