Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,959,868 – 9,959,983 |
Length | 115 |
Max. P | 0.761032 |
Location | 9,959,868 – 9,959,983 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.03 |
Mean single sequence MFE | -19.82 |
Consensus MFE | -16.10 |
Energy contribution | -16.47 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.04 |
Mean z-score | -1.73 |
Structure conservation index | 0.81 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761032 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9959868 115 + 22224390 CGCCGCCAGCGAAACAGAA----AAAA-GCUGAAAGAAAAAAAAUUGUAAGAAAAAAUAAAGGAAAAAGACAGCUGGUGCUGGUUGGGGACCGGCUUGUUUAUGUAAAAAAUGUAAAAUC ....((((((....(((..----....-.)))............((((........))))............))))))(((((((...)))))))...(((((((.....)))))))... ( -20.90) >DroSim_CAF1 9538 117 + 1 CGCCGCCAGCAAAACUGAAAAAAAAAA-GCUGAAAGAAA--AAAUUGUAAGAAAAAAUAAAGGAAAAAGACAGCUGGUGCUGGUUGGGGACCGGCUUGUUUAUGUAAAAAAUGUAAAAUC .((((((((((...............(-((((.......--...((((........))))..........)))))..))))))).(....).)))...(((((((.....)))))))... ( -21.28) >DroEre_CAF1 22440 107 + 1 CGCCGCCAGCAAAACGGAA----AAAACUCUGAA----A--AAAUUGUAAGAAAAAAUAAAGGAAAAAGACAACUGGU---GGUUGGGGACCGGCUUGUUUAUGUAAAAAAUGUAAAAUC .((((((((.....((((.----.....))))..----.--...((((........)))).............)))))---((((...)))))))...(((((((.....)))))))... ( -17.10) >DroYak_CAF1 22365 105 + 1 CGCCGCCAGCAAAACAGAA----AAAA-GCUGAA----A--AAAUUGUAAGGA-AAAUAAAGGAAAAAGACAGCUGGU---GGUUGGGGACCGGCUUGUUUAUGUAAAAAAUGUAAAAUC .(((((((((....(((..----....-.)))..----.--............-.......(........).))))))---((((...)))))))...(((((((.....)))))))... ( -20.00) >consensus CGCCGCCAGCAAAACAGAA____AAAA_GCUGAA____A__AAAUUGUAAGAAAAAAUAAAGGAAAAAGACAGCUGGU___GGUUGGGGACCGGCUUGUUUAUGUAAAAAAUGUAAAAUC .(((((((((....(((............)))............((((........))))............))))))...((((...)))))))...(((((((.....)))))))... (-16.10 = -16.47 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:32 2006