Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,958,861 – 9,958,967 |
Length | 106 |
Max. P | 0.989622 |
Location | 9,958,861 – 9,958,967 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.28 |
Mean single sequence MFE | -32.33 |
Consensus MFE | -22.23 |
Energy contribution | -22.57 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.12 |
Mean z-score | -2.02 |
Structure conservation index | 0.69 |
SVM decision value | 2.17 |
SVM RNA-class probability | 0.989622 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9958861 106 + 22224390 CCACCUCUC-------CACUC----CCUACCAUUUUGCCCCUUUCCACGGGGGGCAGUUUGUGUUGGCCAUUUCGGUUGCCGUUUUCGGUUGUUAUGGCCACUUGCAACACACACAC--- .........-------.....----..........((((((((.....))))))))((.((((((((((((..((...((((....))))))..)))))))......))))).))..--- ( -34.90) >DroSim_CAF1 8521 120 + 1 CCGCCUCUCACUCCUCCCCUCCCCCCCCUCCAUUUUACCCCUUUCCACGGGGGGCAGUUUGGGUUGGCAAUUUCGGUUGCAGUUUUCGGUUGUUAUGGCUGCUUGCAACACAUGCACUGG (((((....((.((....((.((((((.....................)))))).))...)))).))).......(((((((....(((((.....))))).))))))).........)) ( -30.50) >DroYak_CAF1 21239 103 + 1 CC---------UGG----UUC----CCUUCCCCAUUUCCCCUUUCCACGGGGAGUAGUUUGUGUUGGCCAUUUCGGUUGCCGUUUUCGGUUGUUAUGGCCACUUGCAACACACACAAAUG ..---------(((----...----......))).((((((.......))))))..(((((((((((((((..((...((((....))))))..)))))))..........)))))))). ( -31.60) >consensus CC_CCUCUC__U____C_CUC____CCUUCCAUUUUACCCCUUUCCACGGGGGGCAGUUUGUGUUGGCCAUUUCGGUUGCCGUUUUCGGUUGUUAUGGCCACUUGCAACACACACAC__G .....................................((((.......))))....((.((((((((((((..((...((((....))))))..)))))))......))))).))..... (-22.23 = -22.57 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:31 2006