Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,958,128 – 9,958,239 |
Length | 111 |
Max. P | 0.643892 |
Location | 9,958,128 – 9,958,239 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.26 |
Mean single sequence MFE | -30.34 |
Consensus MFE | -22.62 |
Energy contribution | -23.26 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.08 |
Mean z-score | -1.72 |
Structure conservation index | 0.75 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9958128 111 - 22224390 GG-----UGGUGAUUCGCGGAAUGGUGGAGUAUUUG--GUACUCAU--ACAGACCCAGCGACAAGUUGCCGUCAUUUACUUAACUUUCACAAUUUCGAUUUUCACAUCUACAUGACUCCU ((-----.(((((....((((((.(((((((((...--))))))..--...(((.((((.....))))..)))..............))).))))))....)))).((.....))).)). ( -26.20) >DroSec_CAF1 26094 115 - 1 GGUGGG-UGGUAAUUGGCGGAAUU--GAAGUACUUGGAGUACUCAU--AUUGACCCAGCGACAAGUUGCAGUCAUUUACUUAACUUUCACAAUUUCGAUUUACACAUCUACAUGACUCCU .(((((-((((((....(((((((--(.(((((.....)))))...--..((((.((((.....))))..))))...............))))))))..)))).)))))))......... ( -31.60) >DroSim_CAF1 7326 118 - 1 GGUGGGUUGGUGAUUGGCGGAAUUGUGAAGUACUUGGAGUACUCAU--AUAGACCCAGCGACAAGUUGCAGUCAUUUACUUAACUUUCACAAUUUCGAUUUACACAUCUACAUGACUCCU .((((((..((((....((((((((((((((((.....))))....--...(((.((((.....))))..)))............))))))))))))..))))..))))))......... ( -33.50) >DroEre_CAF1 20710 113 - 1 GG-----UGGUGAUUCGCGGAAUUGUGAAGUACUUG--GUACUUAUAUAUAGACCCAGCGACAAGUUGCCGUCGUCUACUUAACUUUCACAAUUUCGAUUUCCACAUUUACAUGACUCCU .(-----(((.......((((((((((((((((...--))))...((..(((((.(.((((....)))).)..)))))..))...))))))))))))....))))............... ( -30.30) >DroYak_CAF1 20486 111 - 1 GG-----UGGUGAUUCGCGGAAUUGUGGAGUAGUUG--GUACUUAU--AUAGACCCAGCGACAAGUUGCCGUCAUUUACUUAACUUUCACAAUUUCGAUUUCCACAUUUACAUGACUCCU .(-----(((.......((((((((((((((.((((--(..((...--..))..)))))(((........))).........)).))))))))))))....))))............... ( -30.10) >consensus GG_____UGGUGAUUCGCGGAAUUGUGAAGUACUUG__GUACUCAU__AUAGACCCAGCGACAAGUUGCCGUCAUUUACUUAACUUUCACAAUUUCGAUUUACACAUCUACAUGACUCCU .........(((.....((((((((((((((((.....)))).........(((.((((.....))))..)))............)))))))))))).....)))............... (-22.62 = -23.26 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:28 2006