Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,957,304 – 9,957,422 |
Length | 118 |
Max. P | 0.557770 |
Location | 9,957,304 – 9,957,422 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.15 |
Mean single sequence MFE | -28.96 |
Consensus MFE | -23.34 |
Energy contribution | -23.58 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.45 |
Structure conservation index | 0.81 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9957304 118 + 22224390 AAAAAAUAAGUCAAAACGAGACCAGAAAAAUAUGCUUCCCGGUUAUGCAAUCCCGAUUGUCUGCAGGCCAAAACGAAACGGUUUU-UGUUUC-AGCGCAGGCGAUUUUUAAUUGCAUGUU ...................((((.(((........)))..))))(((((((...((((((((((..((..((((((((....)))-))))).-.))))))))))))....)))))))... ( -29.70) >DroSec_CAF1 25318 112 + 1 -----AUAAGUCAAAACGAGACCAGAA--AUAUGUUUCCCGGUUAUGCAAUCCCGAUUGUCUGCAGGCCAAAACGAAACGGUUUUGUGUUUC-AGCGCAGGCGAUUUUUAAUUGCAUGUU -----..............((((.(((--(....))))..))))(((((((...((((((((((((((((((((......)))))).)))).-...))))))))))....)))))))... ( -30.70) >DroSim_CAF1 6515 117 + 1 AAAAAAUAAGUCAAAACGAGACCAGAA--AUAUGUUUCCCGGUUAUGCAAUCCCGAUUGUCUGCAGGCCAAAACGAAACGGUUUUUUGUUUC-AGCGCAGGCGAUUUUUAAUUGCAUGUU ...................((((.(((--(....))))..))))(((((((...((((((((((..((..((((((((.....)))))))).-.))))))))))))....)))))))... ( -30.70) >DroEre_CAF1 19989 116 + 1 AAAAAAUAAGUCAAAACGAGACCAGAA--AUAUGUUUCCCGGUUAUGCAAUCCCGAUUGUCUGCGGGCCAAAACGAAACGGUUUU-UGUUUU-AGCGCAGCCGAUUUUUAAUUACAUGUU .((((((..........(((((.(...--.)..))))).(((((.(((...((((........))))..(((((((((....)))-))))))-.))).)))))))))))........... ( -23.60) >DroYak_CAF1 19713 117 + 1 AAAAAAUAAGCGAAAACGAGACCAGAA--AUAUGUUUCCCGGUUAUGCAAUCCCGAUUGUCUGCAGGCCAAAACGAAACGGUUUU-UGUUUUCAGCGCAGGCGAUUUUUAAUUGCAUGUU ...................((((.(((--(....))))..))))(((((((...((((((((((..((.(((((((((....)))-))))))..))))))))))))....)))))))... ( -30.10) >consensus AAAAAAUAAGUCAAAACGAGACCAGAA__AUAUGUUUCCCGGUUAUGCAAUCCCGAUUGUCUGCAGGCCAAAACGAAACGGUUUU_UGUUUC_AGCGCAGGCGAUUUUUAAUUGCAUGUU ...................((((.(((........)))..))))(((((((...(((((((((((((((..........)))))...((.....))))))))))))....)))))))... (-23.34 = -23.58 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:24 2006