Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,956,233 – 9,956,352 |
Length | 119 |
Max. P | 0.892826 |
Location | 9,956,233 – 9,956,352 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.82 |
Mean single sequence MFE | -23.82 |
Consensus MFE | -23.52 |
Energy contribution | -23.02 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.09 |
Mean z-score | -1.79 |
Structure conservation index | 0.99 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9956233 119 - 22224390 AUAAAGCUGAAAACGCCGUGGAAGCUGACUCCUGGCGUCAGGCCAUAAAA-AAAGGUAAAACAAACAAAACAGGCUAACAAACAACAUCAACAACAACGCCGGCGUAUUCAUGAUGCACU .....((((((.(((((((((...(((((.......))))).))))....-.....................(((.......................)))))))).))))....))... ( -26.20) >DroSim_CAF1 5483 119 - 1 AUAAAGCUGAAAACGCCGUGGAAGCUGACUCCUGGCGUCAGGCCAUAAAA-AAAGGUAAAACAAACAAAACAGGCUAACAAACAGCAUCAACAACAACGCCGGCGUAUUCAUGAUGCACU .....((((((.(((((((((...(((((.......))))).))))....-...(((........(......)(((.......)))............)))))))).))))....))... ( -26.70) >DroEre_CAF1 18919 120 - 1 AUAAAGCUGAAAAUGCUGUGGGAGCUGACUCCUGGCGUCAGGCCAUAAAAAAAAGGUAAAACAAACAAAACAGGCUAACAAACAACAUCAACAACAACGCCAGCAUAUUCAUGAUGCACU .....((((((.(((((..(((((....)))))(((((...(((..........)))...............(.....).................)))))))))).))))....))... ( -23.70) >DroYak_CAF1 18669 118 - 1 ACAAAGCUGAAAACGCUGUGGAAGCUGACUCCUGGCGUCAGGCCAUAAA--AAAGGUAAAACAAACAAAACAGGCUAACAAACAACAUCAACAACAACGCCAGCAUAUUCAUGAUGCACU ......((((...(((((.(((.......))))))))))))(((.....--...)))...............(((.......................))).((((.......))))... ( -18.70) >consensus AUAAAGCUGAAAACGCCGUGGAAGCUGACUCCUGGCGUCAGGCCAUAAAA_AAAGGUAAAACAAACAAAACAGGCUAACAAACAACAUCAACAACAACGCCAGCAUAUUCAUGAUGCACU .....((((((.(((((((((...(((((.......))))).))))..........................(((.......................)))))))).))))....))... (-23.52 = -23.02 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:21 2006