Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,956,085 – 9,956,193 |
Length | 108 |
Max. P | 0.868750 |
Location | 9,956,085 – 9,956,193 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.13 |
Mean single sequence MFE | -16.44 |
Consensus MFE | -13.14 |
Energy contribution | -13.02 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.72 |
Structure conservation index | 0.80 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.739381 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9956085 108 + 22224390 ------UAGCCUUCAUUCGCAACCGAUUCAUUAUUGGGGUUUACGCCCAAUUGACUUUCGAUAAAGUCUACCCCCCUUCUU------UUUUUUUUUCAUUUUUUACCUUCUGAGAACUCU ------..((........))....(((((...(((((((....).)))))).((((((....)))))).............------..........................))).)). ( -12.80) >DroSec_CAF1 24176 110 + 1 AUUCAUCAGCCUUCAUUCGCAACCGAUUCAUUAUCGGGGUUUACGCCCAAUUGACUUUCGAUAAAGUCUACCCCUCUUUU----------UUUUUUCAUUUUUUACCUUCUGAGAACUCU .(((.((((...............(((.....)))(((((..((.....((((.....))))...))..)))))......----------...................))))))).... ( -16.70) >DroSim_CAF1 5323 120 + 1 AUUCAUCAGCCUUCAUUCGCAACCGAUUCAUUAUCGGGGUUUACGCCCAAUUGACUUUCGAUAAAGUCUACCCCUCUUUUUUUUCAUUUUUUUUUUCAUUUUUUACCUUCUGAGAACUCU .(((.((((...............(((.....)))(((((..((.....((((.....))))...))..)))))...................................))))))).... ( -16.70) >DroEre_CAF1 18773 108 + 1 AUUCAUCAGCCUUCAAUCCCAACCGAUUCAAUAUCGGGGGCUACGCCCAAUUGACUUUCGAUAAAGUCU--UCUGCCCCU----------CUUUUUUAUUUUUUACCUUCUGAGAACUUU .(((.((((.............(((((.....)))))((((...))))....((((((....)))))).--.........----------...................))))))).... ( -20.30) >DroYak_CAF1 18522 108 + 1 AUUCAUCAGCCUUCAUUCGCAACCGAUUCAUUAUCGGGGUUUACGCCCAAUUGACUUUCGAUAAAGUCC--CCCUCUUGU----------UUUAUUUUUUUUUUACCUUCUGAGAACUUU .(((.((((..............((((.....))))((((....))))....((((((....)))))).--.........----------...................))))))).... ( -15.70) >consensus AUUCAUCAGCCUUCAUUCGCAACCGAUUCAUUAUCGGGGUUUACGCCCAAUUGACUUUCGAUAAAGUCUACCCCUCUUCU__________UUUUUUCAUUUUUUACCUUCUGAGAACUCU .....((((..............((((.....))))(((......)))....((((((....)))))).........................................))))....... (-13.14 = -13.02 + -0.12)
Location | 9,956,085 – 9,956,193 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.13 |
Mean single sequence MFE | -21.92 |
Consensus MFE | -18.86 |
Energy contribution | -18.90 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.81 |
Structure conservation index | 0.86 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868750 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9956085 108 - 22224390 AGAGUUCUCAGAAGGUAAAAAAUGAAAAAAAAA------AAGAAGGGGGGUAGACUUUAUCGAAAGUCAAUUGGGCGUAAACCCCAAUAAUGAAUCGGUUGCGAAUGAAGGCUA------ ..(((..(((....((((....(((........------.............((((((....)))))).((((((.(....)))))))......))).))))...)))..))).------ ( -21.70) >DroSec_CAF1 24176 110 - 1 AGAGUUCUCAGAAGGUAAAAAAUGAAAAAA----------AAAAGAGGGGUAGACUUUAUCGAAAGUCAAUUGGGCGUAAACCCCGAUAAUGAAUCGGUUGCGAAUGAAGGCUGAUGAAU ..(((..(((....((((....(((.....----------............((((((....)))))).((((((.(....)))))))......))).))))...)))..)))....... ( -21.40) >DroSim_CAF1 5323 120 - 1 AGAGUUCUCAGAAGGUAAAAAAUGAAAAAAAAAAUGAAAAAAAAGAGGGGUAGACUUUAUCGAAAGUCAAUUGGGCGUAAACCCCGAUAAUGAAUCGGUUGCGAAUGAAGGCUGAUGAAU ..(((..(((....((((....(((...........................((((((....)))))).((((((.(....)))))))......))).))))...)))..)))....... ( -21.40) >DroEre_CAF1 18773 108 - 1 AAAGUUCUCAGAAGGUAAAAAAUAAAAAAG----------AGGGGCAGA--AGACUUUAUCGAAAGUCAAUUGGGCGUAGCCCCCGAUAUUGAAUCGGUUGGGAUUGAAGGCUGAUGAAU ...((((((((..................(----------.(((((...--.((((((....)))))).((.....)).))))))....((.((((......)))).))..)))).)))) ( -22.40) >DroYak_CAF1 18522 108 - 1 AAAGUUCUCAGAAGGUAAAAAAAAAAUAAA----------ACAAGAGGG--GGACUUUAUCGAAAGUCAAUUGGGCGUAAACCCCGAUAAUGAAUCGGUUGCGAAUGAAGGCUGAUGAAU ..(((..(((....((((............----------....((((.--...)))).((((...(((((((((.(....)))))))..))).))))))))...)))..)))....... ( -22.70) >consensus AGAGUUCUCAGAAGGUAAAAAAUGAAAAAA__________AAAAGAGGGGUAGACUUUAUCGAAAGUCAAUUGGGCGUAAACCCCGAUAAUGAAUCGGUUGCGAAUGAAGGCUGAUGAAU ..(((..(((....((((..................................((((((....)))))).((((((.(....)))))))..........))))...)))..)))....... (-18.86 = -18.90 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:20 2006