Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,952,274 – 9,952,390 |
Length | 116 |
Max. P | 0.972935 |
Location | 9,952,274 – 9,952,390 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.79 |
Mean single sequence MFE | -28.79 |
Consensus MFE | -28.02 |
Energy contribution | -27.80 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.72 |
Structure conservation index | 0.97 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.972935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9952274 116 + 22224390 AUUCUUUUAGUGAUUUAUU----UUUUAUUUUUUCGUGUGUGUCACACGUGACCAAAAUUAGCCUCGAACUUUGGGGCGGGGGUCUCACUUUAAUUGACUUUAAUGUUUUGGCACGGCGA .........(((((.(((.----..............))).))))).((((.(((((((..(((((((...))))))).((((((...........))))))...))))))))))).... ( -29.76) >DroEre_CAF1 14896 103 + 1 AUUCUUUU------------UUAUU-----UUUUCGUGUGUGUCACACGUGACCAAAAUUAGCCUCGAACUUUGGGGCGGGGGUCUCAUUAUAAUUGACUUUAAUGUUUUGGCACGGCGA ........------------.....-----...(((((((...))).((((.(((((((..(((((((...))))))).((((((...........))))))...))))))))))))))) ( -28.50) >DroYak_CAF1 14651 120 + 1 AUUCUUUUAGUAAUUUUCUUUUAUUUUUAUUUUUUGUGUGUGUCACACGUGACCAAAAUUAGCCUCGAACUUUGGGGCGGGGGUCUCACUAUAAUUGACUUUAAUGUUUUGGCACGGCGA .........((.......................((((.....))))((((.(((((((..(((((((...))))))).((((((...........))))))...))))))))))))).. ( -28.10) >consensus AUUCUUUUAGU_AUUU__U_UUAUUUU__UUUUUCGUGUGUGUCACACGUGACCAAAAUUAGCCUCGAACUUUGGGGCGGGGGUCUCACUAUAAUUGACUUUAAUGUUUUGGCACGGCGA .................................(((((((...))).((((.(((((((..(((((((...))))))).((((((...........))))))...))))))))))))))) (-28.02 = -27.80 + -0.22)
Location | 9,952,274 – 9,952,390 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.79 |
Mean single sequence MFE | -20.10 |
Consensus MFE | -19.90 |
Energy contribution | -19.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.37 |
Structure conservation index | 0.99 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.960679 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9952274 116 - 22224390 UCGCCGUGCCAAAACAUUAAAGUCAAUUAAAGUGAGACCCCCGCCCCAAAGUUCGAGGCUAAUUUUGGUCACGUGUGACACACACGAAAAAAUAAAA----AAUAAAUCACUAAAAGAAU ((((((((((((((.......(((...........)))....(((.(.......).)))...)))))).)))).))))...................----................... ( -19.90) >DroEre_CAF1 14896 103 - 1 UCGCCGUGCCAAAACAUUAAAGUCAAUUAUAAUGAGACCCCCGCCCCAAAGUUCGAGGCUAAUUUUGGUCACGUGUGACACACACGAAAA-----AAUAA------------AAAAGAAU (((((((((((((((((((..........)))))........(((.(.......).)))...)))))).)))).))))............-----.....------------........ ( -20.20) >DroYak_CAF1 14651 120 - 1 UCGCCGUGCCAAAACAUUAAAGUCAAUUAUAGUGAGACCCCCGCCCCAAAGUUCGAGGCUAAUUUUGGUCACGUGUGACACACACAAAAAAUAAAAAUAAAAGAAAAUUACUAAAAGAAU (((((((((((((((((((..........)))))........(((.(.......).)))...)))))).)))).)))).......................................... ( -20.20) >consensus UCGCCGUGCCAAAACAUUAAAGUCAAUUAUAGUGAGACCCCCGCCCCAAAGUUCGAGGCUAAUUUUGGUCACGUGUGACACACACGAAAAA__AAAAUAA_A__AAAU_ACUAAAAGAAU ((((((((((((((.......(((...........)))....(((.(.......).)))...)))))).)))).)))).......................................... (-19.90 = -19.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:01 2006