Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,949,358 – 9,949,475 |
Length | 117 |
Max. P | 0.555448 |
Location | 9,949,358 – 9,949,475 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.33 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -22.15 |
Energy contribution | -22.40 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.30 |
Structure conservation index | 0.93 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555448 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9949358 117 + 22224390 AACUCGAUUUGCGCACCAAAUUGACUGUAAAAUGUGCAAUCUGCAAGUUAAUAAUCGCCAGACGAAUGUGCCUGCAAUUUGAGCAGGACAAAAAGUAAAAA---AGCAACAAAAACGGCU ...((((((((.....))))))))((((......(((..((((...(........)..))))....(((.(((((.......))))))))...........---.)))......)))).. ( -23.30) >DroSec_CAF1 12248 117 + 1 AACUCGAUUUGCGCACCAAAUUGACUGUAAAAUGUGCAAUCUGCAAGUUAAUAAUCGCCAGACGAAUGUGCCUGCAAUUUGAGCAGGACAAAAAGCAAAAA---AGCAACAAAAACGGUA ....(((((((.....)))))))(((((......(((....(((..........(((.....))).(((.(((((.......))))))))....)))....---.)))......))))). ( -25.10) >DroEre_CAF1 12058 112 + 1 AACUCGAUUUGCGCACCAAAUUGACUGUAAAAUGUGCAAUCUGCAAGUUAAUAAUCGCCAGACGAAUGUGCCUGCACUUUGAGCCGGACAAAA--------AGCAGCAACAAAAACGGUA ..(((((..(((((((...(((((((........(((.....))))))))))..(((.....)))..))))..)))..)))))(((.......--------..............))).. ( -20.90) >DroYak_CAF1 11777 120 + 1 AACUCGAUUUGCGCACCAAAUUGACUGUAAAAUGUGCAAUCUGCAAGUUAAUAAUCGCCAGACGAAUGUGCCUGCAAUUUGAGCAGGACAAAAAAAAAACAAGCAGCAACAAAAACGGUA ....(((((((.....)))))))(((((....(((.....((((..(((.....(((.....))).(((.(((((.......)))))))).......)))..))))..)))...))))). ( -25.60) >consensus AACUCGAUUUGCGCACCAAAUUGACUGUAAAAUGUGCAAUCUGCAAGUUAAUAAUCGCCAGACGAAUGUGCCUGCAAUUUGAGCAGGACAAAAAG_AAAAA___AGCAACAAAAACGGUA ...((((((((.....))))))))((((......(((..((((...(........)..))))....(((.(((((.......))))))))...............)))......)))).. (-22.15 = -22.40 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:59 2006