Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,939,910 – 9,940,001 |
Length | 91 |
Max. P | 0.956884 |
Location | 9,939,910 – 9,940,001 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 94.51 |
Mean single sequence MFE | -22.50 |
Consensus MFE | -19.80 |
Energy contribution | -20.30 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.12 |
Mean z-score | -2.45 |
Structure conservation index | 0.88 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956884 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9939910 91 + 22224390 UUAUCAAUAUAACGGGCGAUUAUCUGUUUGAUGGUGCAUUUCAUAAGUGGUUAAUAAUAAUUGUUUGUGGAUUGGCUUUUAUUGCCAUUUU ..............((((((((((.....))))))((..((((((((..((((....))))..))))))))...))......))))..... ( -22.10) >DroSec_CAF1 9656 89 + 1 UUAUCAAUAUAACGGGCGAUUAUCUGUUUGAUGGUGCAUUUAAUAAGUGGUUAAUAAUAACUGUUUGUGGACUGGCUUUUAUG--CAUUUU ............(((((.((((((.....)))))))).....(((((..((((....))))..)))))...)))((......)--)..... ( -17.00) >DroEre_CAF1 9365 91 + 1 UUAUCAAUAUAACGGGCGAUUAUCUGUUUGAUGGUGCAUUUCAUAAGUGGUUAAUAAUAAUUGCUUGUGGAUUGGCCUUUAUGGCCAUUUU ...............((.((((((.....))))))))..((((((((..((((....))))..)))))))).(((((.....))))).... ( -27.80) >DroYak_CAF1 9761 91 + 1 UUAUCAAUACAACGGGCGAUUAUCUGUCUGAUGGUGCAUUUCAUAAGUGGUUAAUAAUAAUUGUUUGUGGAUUGGCUUUUAUGGCCAUUUU .........((.((((((......)))))).))......((((((((..((((....))))..)))))))).(((((.....))))).... ( -23.10) >consensus UUAUCAAUAUAACGGGCGAUUAUCUGUUUGAUGGUGCAUUUCAUAAGUGGUUAAUAAUAAUUGUUUGUGGAUUGGCUUUUAUGGCCAUUUU ...............((.((((((.....))))))))..((((((((..((((....))))..)))))))).(((((.....))))).... (-19.80 = -20.30 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:54 2006