Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,937,030 – 9,937,135 |
Length | 105 |
Max. P | 0.875607 |
Location | 9,937,030 – 9,937,135 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.16 |
Mean single sequence MFE | -24.13 |
Consensus MFE | -16.71 |
Energy contribution | -18.77 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.04 |
Mean z-score | -2.05 |
Structure conservation index | 0.69 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875607 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9937030 105 + 22224390 ACAGACAG----ACACCAAAUAAAUGCUCAGGCAAUCAUCGGUUGCAUUUUGUUGUACAUGCCCACAAAUUAACAUGUUUUGCACGGCCAACGCAACAAAAUGCUGCAG----------- ........----............(((....))).......((.((((((((((((....(((..((((.........))))...)))....)))))))))))).))..----------- ( -24.50) >DroSec_CAF1 6802 109 + 1 ACACACACACGCACACCAAAUAAAUGCUCAGGCAAUCAUCGGUUGCAUUUUGUUGUGCAUGCCCACAAAUUAACAUGUUUUGCACGGCCAACGCAACAAAAUGCUGCAG----------- ..........(((.(((.......(((....)))......))).(((((((((((((...(((..((((.........))))...)))...))))))))))))))))..----------- ( -28.82) >DroEre_CAF1 6588 104 + 1 ACAAA----------CCAUAUAAAUGCUCAGGCAAUCAUCGGUUGCAUUUUGUA------GCCGACAAAUUAACAUGUUUUGCACAGCCAACGCAACAAAAUGCUGCAGUUCCACAGUGU .....----------.........(((...(((.....((((((((.....)))------)))))((((.........))))....)))...))).....((((((........)))))) ( -21.90) >DroYak_CAF1 6973 97 + 1 ACACAC------ACGCCAUAUAAAUGCUCAGGCAAUCAUCGGUUGCAUUUUGUA------GACCACAAAUUAACAUGUUUUGCACAGCCAACGCAGCAAAAUGCUGCAG----------- ......------..(((.............))).......(((((.....((((------((..(((........))))))))))))))...(((((.....)))))..----------- ( -21.32) >consensus ACACAC______ACACCAAAUAAAUGCUCAGGCAAUCAUCGGUUGCAUUUUGUA______GCCCACAAAUUAACAUGUUUUGCACAGCCAACGCAACAAAAUGCUGCAG___________ ........................(((....))).......((.((((((((((((....(((..((((.........))))...)))....)))))))))))).))............. (-16.71 = -18.77 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:51 2006