Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,934,393 – 9,934,513 |
Length | 120 |
Max. P | 0.928022 |
Location | 9,934,393 – 9,934,513 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.78 |
Mean single sequence MFE | -34.73 |
Consensus MFE | -23.13 |
Energy contribution | -23.80 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.11 |
Mean z-score | -2.32 |
Structure conservation index | 0.67 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928022 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9934393 120 + 22224390 AAACUACAAAAGUUGCUGAAAGAGAUGGAGAGAUUGCUGGCGAAAGAGAGGUCAGAGCUUAGUCAUUCCCUUGCUGACAUUCUCUUAUUGUUGCCGUCUCUUUCGUUUGCAUUCUUAUGU .....(((.(((.(((((((((((((((((......))(((((((((((((((((.....((.......))..))))).))))))).))))).))))))))))))...)))..))).))) ( -36.50) >DroSec_CAF1 4211 105 + 1 AAACUACAA-AGUUGCUGAAAGAGAUGGAGAGAUUGCAGGCGAAAGAGAGGUCAGAGCUUAGUCAU--------------UCUCUUAUUGUUGCCGUCUCUCUCGUUUGCAUUCGUAAGU .........-..((((.(((.(((((((((((((.((((.(((((((((((.(........).).)--------------)))))).))))))).))))))).))))).).))))))).. ( -30.20) >DroYak_CAF1 4395 115 + 1 AAACUA----AGUUGCUGAAAGAGAUGGAG-GAUGGCAGAUGAAAGAGAGGUCAGAGCUUAGUCAUUUACUUGCUGCCAUUCUCUUGUUGUUGUUGUCUCUUUCGACUGCAGUCGUAAAU ......----..((((.(((((((((((((-((((((((.((((.((.((((....))))..)).))))....))))))))))))..........)))))))))(((....))))))).. ( -37.50) >consensus AAACUACAA_AGUUGCUGAAAGAGAUGGAGAGAUUGCAGGCGAAAGAGAGGUCAGAGCUUAGUCAUU__CUUGCUG_CAUUCUCUUAUUGUUGCCGUCUCUUUCGUUUGCAUUCGUAAGU .((((.....)))).................((.(((((((((((((((.(.(((.....((.....................)).....))).).))))))))))))))).))...... (-23.13 = -23.80 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:45 2006