| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,921,141 – 9,921,246 |
| Length | 105 |
| Max. P | 0.777150 |
| Location | 9,921,141 – 9,921,246 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 88.68 |
| Mean single sequence MFE | -29.38 |
| Consensus MFE | -22.10 |
| Energy contribution | -23.98 |
| Covariance contribution | 1.87 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777150 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9921141 105 + 22224390 AGUGGACAAUGGGGCAGGUGCACUAUCUAUGUACAUGUCCCACUGCCCUCAA----AAUUGCAGGUCAGCAAUGAAAGAUUCA-UAUAGUUUUGGCUCUAAACUUAGAAU .(.((.((.(((((((.(((((.......))))).))))))).)).)).)..----.(((((......)))))...(((..((-........))..)))........... ( -27.80) >DroSec_CAF1 18425 105 + 1 AGUGGUCAAUGGGGCAGGUGCACUAUCUAUGUACAUGUCCCACUGGCCUCAA----AAUUGCAGGUCAGCAUGGAAAGAUUCA-UUUACUUUUGGCUCUAAGCUUAGAAU (((((((..(((((((.(((((.......))))).)))))))(((((((((.----...)).)))))))........)).)))-))..((...(((.....))).))... ( -31.00) >DroSim_CAF1 18623 105 + 1 AGUGGUCAAUGGGGCAGGUGCACUAUCUAUGUACAUGUCCCACUGGCCUCAA----AAUUGCAGGUCAGCAUUGAAAGAUUCA-UUUACUUUUGGCUCUAAGCUUAGAAU (((((((..(((((((.(((((.......))))).)))))))(((((((((.----...)).)))))))........)).)))-))..((...(((.....))).))... ( -31.00) >DroYak_CAF1 18579 110 + 1 AGUGGACAUAGGGGCAGGUGCACUAUCUACAUACAUGCCACACUGCCCCCAAAAAAAAUUGCAGGUCAGCAAUGAAAGAUGUAUUAUAUUUUUGGCCCUAAACUUAGAAU ((.((.(...((((((((((((.............)).))).)))))))((((((....((((..(((....)))....)))).....)))))))))))........... ( -27.72) >consensus AGUGGACAAUGGGGCAGGUGCACUAUCUAUGUACAUGUCCCACUGCCCUCAA____AAUUGCAGGUCAGCAAUGAAAGAUUCA_UAUACUUUUGGCUCUAAACUUAGAAU ((.((((((.((((((.(((((.......))))).)))))).((((((((((......))).)))))))......................))))))))........... (-22.10 = -23.98 + 1.87)
| Location | 9,921,141 – 9,921,246 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 88.68 |
| Mean single sequence MFE | -27.48 |
| Consensus MFE | -21.12 |
| Energy contribution | -22.00 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691814 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9921141 105 - 22224390 AUUCUAAGUUUAGAGCCAAAACUAUA-UGAAUCUUUCAUUGCUGACCUGCAAUU----UUGAGGGCAGUGGGACAUGUACAUAGAUAGUGCACCUGCCCCAUUGUCCACU .(((((....))))).(((((.....-(((.....)))((((......))))))----))).((((((((((.(((((((.......)))))..)).))))))))))... ( -29.60) >DroSec_CAF1 18425 105 - 1 AUUCUAAGCUUAGAGCCAAAAGUAAA-UGAAUCUUUCCAUGCUGACCUGCAAUU----UUGAGGCCAGUGGGACAUGUACAUAGAUAGUGCACCUGCCCCAUUGACCACU .(((((....))))).(((((....(-((........)))((......))..))----))).((.(((((((.(((((((.......)))))..)).))))))).))... ( -23.80) >DroSim_CAF1 18623 105 - 1 AUUCUAAGCUUAGAGCCAAAAGUAAA-UGAAUCUUUCAAUGCUGACCUGCAAUU----UUGAGGCCAGUGGGACAUGUACAUAGAUAGUGCACCUGCCCCAUUGACCACU .(((((....))))).(((((.....-(((.....))).(((......))).))----))).((.(((((((.(((((((.......)))))..)).))))))).))... ( -25.00) >DroYak_CAF1 18579 110 - 1 AUUCUAAGUUUAGGGCCAAAAAUAUAAUACAUCUUUCAUUGCUGACCUGCAAUUUUUUUUGGGGGCAGUGUGGCAUGUAUGUAGAUAGUGCACCUGCCCCUAUGUCCACU ............((((.....................(((((......)))))......(((((((((.(((.(((.(((....)))))))))))))))))).))))... ( -31.50) >consensus AUUCUAAGCUUAGAGCCAAAAGUAAA_UGAAUCUUUCAAUGCUGACCUGCAAUU____UUGAGGCCAGUGGGACAUGUACAUAGAUAGUGCACCUGCCCCAUUGACCACU .(((((....)))))........................(((......)))...........((((((((((.(((((((.......)))))..)).))))))))))... (-21.12 = -22.00 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:36 2006