Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,917,845 – 9,917,940 |
Length | 95 |
Max. P | 0.577515 |
Location | 9,917,845 – 9,917,940 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 77.76 |
Mean single sequence MFE | -31.68 |
Consensus MFE | -23.16 |
Energy contribution | -21.72 |
Covariance contribution | -1.44 |
Combinations/Pair | 1.48 |
Mean z-score | -0.97 |
Structure conservation index | 0.73 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577515 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9917845 95 + 22224390 UAGUCCGCCAUGCUGGUGGUCCUGCGGUUCUGCAUCAGACGCUUGGUGCCAUCCAAGCGGGCUGAAACAAGAAAUUCGU------UUUGUCAGA-GCGACUC ..(.(((((.....))))).).....((((((..((((.(((((((......)))))))..)))).((((((......)------)))))))))-))..... ( -34.70) >DroGri_CAF1 19234 94 + 1 UAGUCAGCAAUGCUUGCUGUCUUACGCUUUUGCAUUAGACGCUUCGUGCCAUCGAGGCGUGCUGGAAGGGAAAAAUAGU------UUUGUAUUACACAAC-- ...((((((((((..((........))....)))))..((((((((......)))))))))))))..............------.((((.....)))).-- ( -24.60) >DroSec_CAF1 15137 93 + 1 UAGUCCGCCAUGCUGGUGGUCCUGCGGUUCUGCAUCAGGCGCUUGGUGCCAUCCAAGCGGGCUGAAACAAGAAAUUCGU------UUUGUGGGA-GCGAC-- ..(.(((((.....))))).)...((.(((..((((((.(((((((......)))))).).))))(((((....)).))------).))..)))-.))..-- ( -33.60) >DroSim_CAF1 15346 93 + 1 UAGUCCGCCAUGCUGGUGGUCUUGCGGUUCUGCAUCAGACGCUUGGUGCCAUCCAAGCGGGCUGAAACAAGAAAUUCGC------UUAGUGGGA-GCGAC-- .((.(((((.....))))).))((((....))))((((.(((((((......)))))))..))))..........((((------((.....))-)))).-- ( -35.90) >DroYak_CAF1 15196 94 + 1 UAGUCGGCCAUGCUGGCGGUCCUGCGGUUCUGCAUCAGACGCUUGGUGCCAUCCAAGCGGGCUGAAACGAGGCAUUUGG------UUAGUUG-U-GCGAGUU (((..(((((((((.((((..(....)..)))).((((.(((((((......)))))))..)))).....))))..)))------))..)))-.-....... ( -32.10) >DroAna_CAF1 12050 99 + 1 UAGUCCGCCAUGCUGGCUGCCUUGCGGUUCUGCAUCAGUCGCUUGGUGCCAUCCAAACGGGCUGGAAGAGGAAAUCACAUAAGAGUUUGUCUAA-AUCUC-- (((((((....(.((((.(((..((((..(((...)))))))..))))))).)....)))))))..(((.(((.((......)).))).)))..-.....-- ( -29.20) >consensus UAGUCCGCCAUGCUGGCGGUCCUGCGGUUCUGCAUCAGACGCUUGGUGCCAUCCAAGCGGGCUGAAACAAGAAAUUCGU______UUUGUCGGA_GCGAC__ ..(.(((((.....))))).)......((((...((((.(((((((......)))))))..))))....))))............................. (-23.16 = -21.72 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:34 2006