Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,915,189 – 9,915,301 |
Length | 112 |
Max. P | 0.754861 |
Location | 9,915,189 – 9,915,301 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.68 |
Mean single sequence MFE | -36.98 |
Consensus MFE | -22.30 |
Energy contribution | -23.02 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.10 |
Mean z-score | -2.14 |
Structure conservation index | 0.60 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9915189 112 + 22224390 UAAGCCGCAAUUUAUUAUGUCCUCUGGCGGUGAUAC---AUCCCCACUGGACUCCAAUUGGGUCAGCGGUGGUCCGG-----CUCCCCAAGCCCAUGCUGUCCAACUGGACACGCAUUAA ...(((((..........((((..(((.((((...)---))).)))..))))(((....)))...))))).....((-----((.....)))).(((((((((....))))).))))... ( -38.50) >DroSec_CAF1 12503 112 + 1 UAAGCCGCAAUUUAUUAUGCCCUCUGGCGGCGAUAC---AUCCCCACUGGACUCCAAUUGGGUCAGCGGUGGUCCGG-----CUCCCCAAGCUCAUGCUGUCCAACUGGACACGCAUUAA ..(((((.....((((.((((....))))..)))).---....(((((((((.((....)))))..))))))..)))-----))..........(((((((((....))))).))))... ( -36.10) >DroSim_CAF1 12691 112 + 1 UAAGCCGCAAUUUAUUAUGCCCUCUGGCGGCGAUAC---AUCCCCACUGGACUCCAAUUGGGUCAGCGGUGGUCCGG-----CUCCCCAAGCUCAUGCUGUCCAACUGGACACGCAUUAA ..(((((.....((((.((((....))))..)))).---....(((((((((.((....)))))..))))))..)))-----))..........(((((((((....))))).))))... ( -36.10) >DroEre_CAF1 12791 95 + 1 UA--------------AUGCCCACUGGC---GACAC---AUCCCAACUGGACUCCAAUUGGGUCAGCGGACGUCCAG-----CUCCCCAGGCACAAGCUGUCCAACUGGACACGCAUUAA ((--------------((((((.(((((---((...---.))((((.(((...))).))))))))).))..((((((-----.......(((....)))......))))))..)))))). ( -32.52) >DroYak_CAF1 12579 116 + 1 UAAGCCGCAAUUUGUUAUGCCCUCUGGC----ACACUGGAGCCCAACUGGAAUCCAAUUGGGUCAGCGGCCGUGCACAGGCUGUCCCCAGGCACUGGCUGUCCAACUGGACACGCAUUAA ..((((((.........((((....)))----)..((((.((((((.(((...))).))))))..((((((.......))))))..))))))...))))((((....))))......... ( -41.70) >consensus UAAGCCGCAAUUUAUUAUGCCCUCUGGCGG_GAUAC___AUCCCCACUGGACUCCAAUUGGGUCAGCGGUGGUCCGG_____CUCCCCAAGCACAUGCUGUCCAACUGGACACGCAUUAA ...(((((..........(((....))).............(((...(((...)))...)))...)))))..........................(((((((....))))).))..... (-22.30 = -23.02 + 0.72)
Location | 9,915,189 – 9,915,301 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.68 |
Mean single sequence MFE | -43.54 |
Consensus MFE | -25.64 |
Energy contribution | -26.16 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.08 |
Mean z-score | -2.20 |
Structure conservation index | 0.59 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.754861 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9915189 112 - 22224390 UUAAUGCGUGUCCAGUUGGACAGCAUGGGCUUGGGGAG-----CCGGACCACCGCUGACCCAAUUGGAGUCCAGUGGGGAU---GUAUCACCGCCAGAGGACAUAAUAAAUUGCGGCUUA ....((((..(((((((((.((((.(((..((((....-----)))).)))..))))..)))))))))((((..(((((..---......)).)))..)))).........))))..... ( -40.70) >DroSec_CAF1 12503 112 - 1 UUAAUGCGUGUCCAGUUGGACAGCAUGAGCUUGGGGAG-----CCGGACCACCGCUGACCCAAUUGGAGUCCAGUGGGGAU---GUAUCGCCGCCAGAGGGCAUAAUAAAUUGCGGCUUA ...((((.(((((....)))))))))(((((.((.((.-----.((..((.((((((((((....)).)).)))))))).)---)..)).))(((....)))............))))). ( -42.70) >DroSim_CAF1 12691 112 - 1 UUAAUGCGUGUCCAGUUGGACAGCAUGAGCUUGGGGAG-----CCGGACCACCGCUGACCCAAUUGGAGUCCAGUGGGGAU---GUAUCGCCGCCAGAGGGCAUAAUAAAUUGCGGCUUA ...((((.(((((....)))))))))(((((.((.((.-----.((..((.((((((((((....)).)).)))))))).)---)..)).))(((....)))............))))). ( -42.70) >DroEre_CAF1 12791 95 - 1 UUAAUGCGUGUCCAGUUGGACAGCUUGUGCCUGGGGAG-----CUGGACGUCCGCUGACCCAAUUGGAGUCCAGUUGGGAU---GUGUC---GCCAGUGGGCAU--------------UA .((((((..((((((((...((((....).)))...))-----))))))..((((((.(((((((((...)))))))))..---(....---.)))))))))))--------------)) ( -41.00) >DroYak_CAF1 12579 116 - 1 UUAAUGCGUGUCCAGUUGGACAGCCAGUGCCUGGGGACAGCCUGUGCACGGCCGCUGACCCAAUUGGAUUCCAGUUGGGCUCCAGUGU----GCCAGAGGGCAUAACAAAUUGCGGCUUA ......(((((((....)))).(((((.((.((....))))))).)))))(((((.(((((((((((...))))))))).))...(((----(((....)))))).......)))))... ( -50.60) >consensus UUAAUGCGUGUCCAGUUGGACAGCAUGAGCUUGGGGAG_____CCGGACCACCGCUGACCCAAUUGGAGUCCAGUGGGGAU___GUAUC_CCGCCAGAGGGCAUAAUAAAUUGCGGCUUA ...((((.(((((....)))))))))..((((..((........(((....)))....(((.(((((...))))).)))..............))...)))).................. (-25.64 = -26.16 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:34 2006