Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,908,264 – 9,908,369 |
Length | 105 |
Max. P | 0.629960 |
Location | 9,908,264 – 9,908,369 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.11 |
Mean single sequence MFE | -27.36 |
Consensus MFE | -6.75 |
Energy contribution | -6.95 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.36 |
Mean z-score | -1.72 |
Structure conservation index | 0.25 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9908264 105 - 22224390 GUUU--UAUUGUUGUUCUUUCUACUGCUUUUUUUU-----UUUUUUCUUGUUUCCUGUCGAACG--UGAAUGAGAAGG------AGAAGAAGAAGCGGAAACAGGCAACGUCAUAAAUAU ..((--(((((((((.((.....((((((((((((-----((((((((..((..(........)--..))..))))))------))))))))))))))....))))))))..)))))... ( -31.30) >DroSec_CAF1 5729 104 - 1 GUUU--UAUUGUUGUUCUUUCCACGGCUUUU------UUUUUUAUUCUUGUUUCCUGUCGAACG--UGAAUGAGAAGA------AGAAGAAGAAGCGGAAACAGGCAGCGUCAUAAAUAU ..((--((((((((((.(((((...((((((------((((((.((((..((..(........)--..))..))))..------)))))))))))))))))..)))))))..)))))... ( -27.80) >DroEre_CAF1 6149 109 - 1 GUUUAUUGU---UGUUCUUUCUACGGCUUUUGU------UUUUGUUCUUGUUUCCUGUCGAACG--UGAAUGUGAAGAAAAAUAAGAAGAAGAAGCGGAAACAGGCAGCGUCAUAAAUAU (((((((((---((((.(((((.(...((((((------((((.(((....(((.((.....))--.)))...))).)))))))))).).))))).(....).)))))))..)))))).. ( -21.80) >DroYak_CAF1 5712 110 - 1 GUUUAUUGUUGUUGUUCUUUCUACUGGCUUUGUUU--UUUUUUGUUCUUGUUUCCUGUCGAACG--UGAAUGCGAAGA------AGAAGAAGAAGCGGAAACGGGCAGCGUCAUAAAUAU ((((((.(.((((((((((((..((..((((.(((--((((((((((.(((((......)))))--.))..)))))))------)))))))).))..)))).)))))))).))))))).. ( -29.90) >DroAna_CAF1 5146 112 - 1 CUUC--UCUUCUUAUUUAAUCAGGUCCUUUCUUACUCAGUUUUUUUUCCGAUGGCUGUCGAACAGUCGAAAGAGAGGA------AGCAGAAGGAGCGAAAACAGGCAUCGCCAUAAAUAU ....--......((((((....(.(((((.((......((((((((((...((((((.....))))))...)))))))------)))))))))).).......(((...))).)))))). ( -26.00) >consensus GUUU__UAUUGUUGUUCUUUCUACUGCUUUUGU______UUUUGUUCUUGUUUCCUGUCGAACG__UGAAUGAGAAGA______AGAAGAAGAAGCGGAAACAGGCAGCGUCAUAAAUAU ..............................................(((((((((..((................................))...)))))))))............... ( -6.75 = -6.95 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:27 2006