Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,901,114 – 9,901,273 |
Length | 159 |
Max. P | 0.919522 |
Location | 9,901,114 – 9,901,234 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.75 |
Mean single sequence MFE | -25.65 |
Consensus MFE | -23.18 |
Energy contribution | -23.54 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.03 |
Mean z-score | -1.41 |
Structure conservation index | 0.90 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832591 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9901114 120 - 22224390 UGUGGCCCAACUUGGCCCGAACUCCUUGGUUCCAACAAUAUUUUGCAUUGAUAUGCUAGAGCUACCAACAAGUAUAUAGUAUUAAUAUUUCUAACAAUUCGGAAUGUGCACUUAACUAAG .(.((((......)))))......(((((((......((((((((.((((..((((((..(((.......)))...))))))............)))).))))))))......))))))) ( -22.44) >DroSec_CAF1 5426 120 - 1 UGGGGCCCAACUUGGCCCAAACUCCUUGGUUCCAACCAUAUUUUGCAUUGAUCUGCUAGAGCUACCAACAAGUAUAUAGUAUUAAUAUUUCUAACAAUUCGGAAUGUGCACUUAACUAAG ..(((((......)))))......(((((((.....(((((((((.((((...(((((..(((.......)))...)))))(((.......))))))).))))))))).....))))))) ( -27.20) >DroSim_CAF1 5467 120 - 1 UGGGGCCCAACUUGGCCCAAACUCCUUGGUUCCAACCAUAUUUUGCAUUGAUCUGCUAGAGCUACCAACAAGUAUAUAGUAUUAAUAUUUCUAACAAUUCGGAAUGUGCACUUAACUAAG ..(((((......)))))......(((((((.....(((((((((.((((...(((((..(((.......)))...)))))(((.......))))))).))))))))).....))))))) ( -27.20) >DroEre_CAF1 5393 120 - 1 UGGGGCCCAACUUGGCCCAAACUCUUUGGUUCCAACAAUAUUUUGCAUUGAUCUGCUAGAGCUACAAACAAGUAUAUAGUAAUAAUAUUUCUAACAAUUCGGAAUGUGCACUUAACUAAG ..(((((......))))).......((((((......((((((((.((((....((....)).......((((((.((....))))))))....)))).))))))))......)))))). ( -23.90) >DroYak_CAF1 5470 120 - 1 UGGGGCCCAACUUGGCCCUAACUCUUUGGUUCCAACCAUAUUUUGCAUUGAUCUGCUAGAGCUACAAACAAGUAUAUAGUAAUAAUAUUUCUAACAAUUCGGAAUGUGCACUUAACUAAG (((((((......))))))).....((((((.....(((((((((.((((....((....)).......((((((.((....))))))))....)))).))))))))).....)))))). ( -27.50) >consensus UGGGGCCCAACUUGGCCCAAACUCCUUGGUUCCAACCAUAUUUUGCAUUGAUCUGCUAGAGCUACCAACAAGUAUAUAGUAUUAAUAUUUCUAACAAUUCGGAAUGUGCACUUAACUAAG ..(((((......)))))......(((((((.....(((((((((.((((...(((((..(((.......)))...)))))....((....)).)))).))))))))).....))))))) (-23.18 = -23.54 + 0.36)
Location | 9,901,154 – 9,901,273 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.04 |
Mean single sequence MFE | -30.41 |
Consensus MFE | -26.08 |
Energy contribution | -26.68 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.86 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919522 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9901154 119 + 22224390 ACUAUAUACUUGUUGGUAGCUCUAGCAUAUCAAUGCAAAAUAUUGUUGGAACCAAGGAGUUCGGGCCAAGUUGGGCCACAAA-AAUAUUGGUAAAAGCGCAGGCCAAAGUGUCUUAAAUA (((....((((.(((((...(((((((................)))))))))))).))))...((((..(((..((((....-.....))))...)))...))))..))).......... ( -29.09) >DroSec_CAF1 5466 118 + 1 ACUAUAUACUUGUUGGUAGCUCUAGCAGAUCAAUGCAAAAUAUGGUUGGAACCAAGGAGUUUGGGCCAAGUUGGGCCCCAAA-AA-AUUGGUAAAAGCGCAGGCCAAAGUGUCUUAAACA .....((((((..((((.((....(((......)))........(((...(((((....((.(((((......))))).)).-..-.)))))...)))))..))))))))))........ ( -31.10) >DroSim_CAF1 5507 118 + 1 ACUAUAUACUUGUUGGUAGCUCUAGCAGAUCAAUGCAAAAUAUGGUUGGAACCAAGGAGUUUGGGCCAAGUUGGGCCCCAAA-AA-AUUGGUAAAAGCGCAGGCCAAAGUGUCUUAAACA .....((((((..((((.((....(((......)))........(((...(((((....((.(((((......))))).)).-..-.)))))...)))))..))))))))))........ ( -31.10) >DroEre_CAF1 5433 118 + 1 ACUAUAUACUUGUUUGUAGCUCUAGCAGAUCAAUGCAAAAUAUUGUUGGAACCAAAGAGUUUGGGCCAAGUUGGGCCCCAAA-AA-AUUGGUAAAAGCGCAGGCCAAAGUGUCUUAAACA .....((((((((((((.((((((((((..............))))))))(((((....((.(((((......))))).)).-..-.)))))....))))))))..))))))........ ( -30.24) >DroYak_CAF1 5510 119 + 1 ACUAUAUACUUGUUUGUAGCUCUAGCAGAUCAAUGCAAAAUAUGGUUGGAACCAAAGAGUUAGGGCCAAGUUGGGCCCCAAAAAA-AUUGGUAAAAGCGCAGGCCAAAGUGUCUUAAAUA .....((((((((((((((((((.(((......)))......((((....)))).)))))).(((((......))))).......-............))))))..))))))........ ( -30.50) >consensus ACUAUAUACUUGUUGGUAGCUCUAGCAGAUCAAUGCAAAAUAUGGUUGGAACCAAGGAGUUUGGGCCAAGUUGGGCCCCAAA_AA_AUUGGUAAAAGCGCAGGCCAAAGUGUCUUAAACA .....((((((...(((.((....(((......)))........(((...(((((....((.(((((......))))).))......)))))...)))))..))).))))))........ (-26.08 = -26.68 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:26 2006