Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,898,791 – 9,898,892 |
Length | 101 |
Max. P | 0.666002 |
Location | 9,898,791 – 9,898,892 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 81.22 |
Mean single sequence MFE | -27.23 |
Consensus MFE | -17.05 |
Energy contribution | -18.52 |
Covariance contribution | 1.47 |
Combinations/Pair | 1.14 |
Mean z-score | -1.85 |
Structure conservation index | 0.63 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666002 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9898791 101 - 22224390 AAUAGACACGGGGCCUACCUAUAGCUGACCCCACUGAUGACUUAGCAGCACCUGCUG-CCGCCUGAUUA----UUUUAAUUUGUAAUCACUUUGUAGGCUCCGCUG ......((((((((((((..........................(((((....))))-)....((((((----(........)))))))....)))))))))).)) ( -31.50) >DroSec_CAF1 3088 102 - 1 AAUAGACACGGGGCCUACCUAUAGCUGACCCCACUGAUGACUUAGCAGAACCUGCUGGCCGCCUGAUUA----UUUUAAAUUGUAAUCACUUUGUAGGCUCCGAUG ........((((((((((.......................(((((((...))))))).....((((((----(........)))))))....))))))))))... ( -29.50) >DroSim_CAF1 3113 101 - 1 AAUAGACACGGGGCCUACCUAUAGCUGACCCCACUGAUGACUUAGCAGCACCUGCUG-CCGCCUGAUUA----UUUUAAAUUGUAAUCACUUUGUAGGCUCCGAUG ........((((((((((..........................(((((....))))-)....((((((----(........)))))))....))))))))))... ( -32.10) >DroEre_CAF1 3028 101 - 1 AAUAGACACGGGGCCUACCUAUAGCUGACCCCACUGAUGACUUAGCAGCACCUGCUG-CUGCCUGAUUA----UUUUAAUUUGUAACCACUUUGUAGGCUCCGCUG ......((((((((((((.........((......((((((.(((((((....))))-)))...).)))----)).......)).........)))))))))).)) ( -29.49) >DroYak_CAF1 3144 101 - 1 AAUAGGCACGGGGCCUACCUAUAGCUGACCCCACUGAUGACUUAGCAGCACCUGCUG-CCGCCUGAUUA----UUUUAAUUUGUAAUCACUUUGUAGGCUCCGCUG ........((((((((((..........................(((((....))))-)....((((((----(........)))))))....))))))))))... ( -31.40) >DroAna_CAF1 4419 85 - 1 ------------AUUUACCUUUGCCUGACGCGAUUGAUG---------CGGCUGCUAAUCGCUUAAUUAAAAUUAUUAAAUUGUAUUUACUUUGUAGUUUUCACAC ------------.................(((((((..(---------(....)))))))))......((((((((......((....))...))))))))..... ( -9.40) >consensus AAUAGACACGGGGCCUACCUAUAGCUGACCCCACUGAUGACUUAGCAGCACCUGCUG_CCGCCUGAUUA____UUUUAAAUUGUAAUCACUUUGUAGGCUCCGCUG ........((((((((((........................((((((...))))))......((((((..............))))))....))))))))))... (-17.05 = -18.52 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:23 2006