Locus 3709

Sequence ID X_DroMel_CAF1
Location 9,881,243 – 9,881,335
Length 92
Max. P 0.651441
window6074

overview

Window 4

Location 9,881,243 – 9,881,335
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 79.06
Mean single sequence MFE -29.85
Consensus MFE -16.72
Energy contribution -19.20
Covariance contribution 2.48
Combinations/Pair 1.17
Mean z-score -1.83
Structure conservation index 0.56
SVM decision value 0.25
SVM RNA-class probability 0.651441
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9881243 92 - 22224390
GCUGCUAGCUGCUUCAGUGGUCCUAGUUCUAAAGAAAGAACGACGUGUUGUAGUUUCAGUAGAUAUCUGGGCAUCACUGUCUGCUUCAGUUG
((((..(((.....((((((((((((.((((..((((..((((....))))..))))..))))...))))).)))))))...))).)))).. ( -32.20)
>DroSec_CAF1 12598 92 - 1
GCUGCUAGCUGCUUCAGUGAUCCUAGUUCUAAAGAAAGAACGACGUGUUGGACCUUCAGUAGAUAUCUGGGCAUCACUGUCUGCUUCAGUGG
((((..(((.....((((((((((((.((((..(((.(..(((....)))..).)))..))))...))))).)))))))...))).)))).. ( -31.80)
>DroSim_CAF1 11157 92 - 1
GCUGCUAGCUGUUUCAGUGGUCCUAGUUCUAAAGAAAGAACGACGUGUUGGACCUUCAGUAGAUAUCUGGGCAUCACUGUGUGGUUCAGUGG
.(..(((((..(..((((((((((((.((((..(((.(..(((....)))..).)))..))))...))))).))))))).)..))).))..) ( -31.20)
>DroEre_CAF1 21171 92 - 1
GCUGCUAGCUGCUUCAGUGGUCCUAGUUCUAAAGAAAGAACGACGUGUUGCACCUUCGGUAGAUAGCUGGGCUUCACUGUCUGCUUCAGUGG
((((..(((.....((((((.((((((((((..(((.(..(((....)))..).)))..))))..))))))..))))))...))).)))).. ( -29.10)
>DroYak_CAF1 4762 92 - 1
GCUGCUAGCGUCUUCAGUGGUCCUAGUUCUAAAGAAGGAACGACGUGUCGGACCUUCGGUAGAUAUCUGAGCUUCACUGUCAGCUUCAGUGG
((((..(((.....((((((..((((.((((..(((((..(((....)))..)))))..))))...)).))..))))))...))).)))).. ( -33.60)
>DroAna_CAF1 81327 82 - 1
----------UCUUCAGUGAUGCCAUGUCUAAGGAAAGAAGGUCGGUUGGUGGCCUCGGUUGAUGUGCUAUCAUCGGUCAAAGCUUCACCAG
----------......((((.((....(((......))).(..((((.(((((((((....)).).))))))))))..)...)).))))... ( -21.20)
>consensus
GCUGCUAGCUGCUUCAGUGGUCCUAGUUCUAAAGAAAGAACGACGUGUUGGACCUUCAGUAGAUAUCUGGGCAUCACUGUCUGCUUCAGUGG
((((..(((.....((((((((((((.((((..(((....(((....)))....)))..))))...))))).)))))))...))).)))).. (-16.72 = -19.20 +   2.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:12 2006