Locus 3707

Sequence ID X_DroMel_CAF1
Location 9,875,446 – 9,875,555
Length 109
Max. P 0.500000
window6072

overview

Window 2

Location 9,875,446 – 9,875,555
Length 109
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 71.35
Mean single sequence MFE -25.60
Consensus MFE -17.41
Energy contribution -17.25
Covariance contribution -0.16
Combinations/Pair 1.22
Mean z-score -0.84
Structure conservation index 0.68
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9875446 109 + 22224390
-AAUUGUCGUAAUUCG------CUAAUGUUC--UUUUUCCUUCAUUGCAGUUCCGGCGUGGAGCGGCCUGGCAAACGCUCUUCCUGCUCUGCGCUCUCGCCUAUUGCAUAAAUGGUAG
-.((((.((.....))------.))))....--.....((.....((((((..(((((..((((((...(((....)))....))))))..)))...))...)))))).....))... ( -29.00)
>DroPse_CAF1 8249 87 + 1
-------------------------------CUUUUGAUUUUCAUUGCAGUUCCGGCGUGGAGCGGCCUGGCAAACGCUCUUCCUGCUCUGCGCACUCGCAUAUUGCAUAAAUGGUAA
-------------------------------..........((((((((((..(((((..((((((...(((....)))....))))))..)))...))...))))))...))))... ( -26.90)
>DroGri_CAF1 15822 96 + 1
------U----AUUGU----UUU------UC-CUU-UAUUCCCGUUACAGUUACGGCCUGGAGCGGCCUGGCAAACGCUCUUCCUUCUCUGCGCGUUGGCUUAUUGCAUCAAUGGUGA
------.----.....----...------..-...-...(((((((...((((.((((......)))))))).(((((.(..........).))))).((.....))...))))).)) ( -20.70)
>DroMoj_CAF1 25078 94 + 1
------U----AUUAU------U------UC-UAU-UGCUUCGCUUACAGUUCCGGCGUGGAGCGACCUGGCAAACCCUCUUUCUCCUCUGCGCACUAGCCUACUGUAUCAAUGGUAA
------.----.....------.------..-..(-((((.....((((((...(((.(((.(((....((..((......))..))....))).)))))).)))))).....))))) ( -21.50)
>DroAna_CAF1 75204 101 + 1
-AAUUAU----AUUCG------AU----UUA--UUUGUUGUCCAUUGCAGUUCCGGCGUGGAGCGGCUUGGCAAAUGCUCUUCCUUCUCUGCGCACUCGCCUAUUGCAUUAAUGGUAA
-......----...((------((----...--...)))).((((((((((..(((((..(((.((...(((....)))...))..)))..)))...))...))))))...))))... ( -24.50)
>DroPer_CAF1 8390 116 + 1
CAAUUAUUAAAAAACGGUUC--CUCUUGGUCCUUUUGAUUUUCAUUGCAGUUCCGGCGUGGAGCGGCCUGGCAAACGCUCUUCCUGCUCUGCGCACUCGCAUAUUGCAUAAAUGGUAA
..((((((.......((..(--(....)).)).............((((((..(((((..((((((...(((....)))....))))))..)))...))...))))))..)))))).. ( -31.00)
>consensus
______U____AUUCG______C______UC_UUUUGAUUUCCAUUGCAGUUCCGGCGUGGAGCGGCCUGGCAAACGCUCUUCCUGCUCUGCGCACUCGCCUAUUGCAUAAAUGGUAA
.........................................((((((((((....((((((((.((...(((....)))...))..))))))))........))))))...))))... (-17.41 = -17.25 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:10 2006