Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,870,434 – 9,870,550 |
Length | 116 |
Max. P | 0.776550 |
Location | 9,870,434 – 9,870,550 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.26 |
Mean single sequence MFE | -28.74 |
Consensus MFE | -24.77 |
Energy contribution | -25.10 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.26 |
Structure conservation index | 0.86 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.776550 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9870434 116 - 22224390 CCACGACUCUGACUGCUCCGCUUUUUGCUCCUUGGAGGCUUUCUUAAUCGCCUUUUGGCGUGACAGGAGGCCACCAAAUACCAAAAAUCAAAAAACGAAAACCAAAAA----CACCGAUA ...................(.((((((....((((.((((((((....((((....))))....)))))))).))))....)))))).)...................----........ ( -27.00) >DroSec_CAF1 15104 116 - 1 CCACGACUCUGACUGCUCCGUUUUUUGCUCCUUGGAGGCUUUCUUAAUCACCUUUUGGCGUGACAGGAGGCCACCAAAUACCAAAAAUCAAAAAACGAAAACCAAAAA----CACCGAUA ..................(((((((((....((((.((((((((...(((((.....).)))).)))))))).))))...........)))))))))...........----........ ( -24.46) >DroYak_CAF1 14763 120 - 1 GCACGACUCGGAGUGCUCCGCUUUUUGCUCCUUGGAGGCUUUCUUAAUCGCCUUUUGGCGUGACAGGAGGCCACCAAAUACCAAAAAUCAAAAAACCAAAACCAAAAAGCAAAACCGUUA ((((........))))...((((((((....((((.((((((((....((((....))))....)))))))).)))).........................)))))))).......... ( -34.75) >consensus CCACGACUCUGACUGCUCCGCUUUUUGCUCCUUGGAGGCUUUCUUAAUCGCCUUUUGGCGUGACAGGAGGCCACCAAAUACCAAAAAUCAAAAAACGAAAACCAAAAA____CACCGAUA ...................(.((((((....((((.((((((((....((((....))))....)))))))).))))....)))))).)............................... (-24.77 = -25.10 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:09 2006