Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,868,181 – 9,868,289 |
Length | 108 |
Max. P | 0.559503 |
Location | 9,868,181 – 9,868,289 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.53 |
Mean single sequence MFE | -13.80 |
Consensus MFE | -9.23 |
Energy contribution | -9.60 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.11 |
Mean z-score | -1.59 |
Structure conservation index | 0.67 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9868181 108 - 22224390 UCAAAAAGACAGCGAAAAAAAAAUCAGGUUUGUAAUACAGUAGUGAAAGCUUUUGAAAAGAAAACUAUAAUGCCA----AAG-AGCA-------ACAAAAAAUAUGUAUUAAAAAGGCAA ...........................((((.((((((((((((.....(((.....)))...)))))..(((..----...-.)))-------..........)))))))...)))).. ( -13.40) >DroSec_CAF1 12906 109 - 1 UCAAAAAGACAGCAAAA---AUAUCAGGUUUGUAAUACAGUAGUGAAAGCUUUUGAAAAGAAAACUAUAAUGCCAAACAAAG-AGCU-------ACAAAAAAUAUGUAUUAUACAGACAA .................---.......((((((((((((....((..(((((((.........................)))-))))-------.)).......)))))..))))))).. ( -14.21) >DroSim_CAF1 13071 108 - 1 UCAAAAAGACAGCAAAAAAAAAAUCAGGUUUGUAAUACAGUAGUGAAAGCUUUUGAAAAGAAAACUAUAAUGCCA----AAG-AGCU-------ACAAAAAAUAUGUAUUAUACAGACAA ...........................((((((((((((....((..(((((((.....................----)))-))))-------.)).......)))))..))))))).. ( -14.40) >DroYak_CAF1 12486 114 - 1 UCAAGAAA--GGCAAACAAAAAAUCAGGUUUGUAAUACAGUAGUGAAAGCUUUUGGAAAGAAAACUAUAAUACCA----AAUAAGCUGCAAACAAAAAAAUAUAUAUAUUAUACAGACAA ........--.................(((((((........((...(((((((((................)))----)..)))))....)).....((((....)))).))))))).. ( -13.19) >consensus UCAAAAAGACAGCAAAAAAAAAAUCAGGUUUGUAAUACAGUAGUGAAAGCUUUUGAAAAGAAAACUAUAAUGCCA____AAG_AGCU_______ACAAAAAAUAUGUAUUAUACAGACAA ...........................(((((((...(((.(((....))).)))............((((((................................))))))))))))).. ( -9.23 = -9.60 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:01 2006