Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,862,537 – 9,862,641 |
Length | 104 |
Max. P | 0.542199 |
Location | 9,862,537 – 9,862,641 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 79.55 |
Mean single sequence MFE | -32.50 |
Consensus MFE | -18.80 |
Energy contribution | -19.76 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.20 |
Mean z-score | -1.76 |
Structure conservation index | 0.58 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542199 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9862537 104 + 22224390 UA---G-UAGUUGCUGUUUGGGUUGCUUUUUUUAU---UUG---GCUGCUGCUGCUGGGAGGCAGUGGAGCAUUCAGCCA----AGAUCUGUGCAGAUUGCAUAAAAUACAGACAGAC ..---.-......(((((((..((..........(---(((---(((((..(((((....)))))..)......))))))----))...(((((.....))))).))..))))))).. ( -33.50) >DroPse_CAF1 7211 107 + 1 UU---GUUAGUGGCCAAUGCUGCUGCUGUAGUU--------GUUGUUGUUGGCUUUGGUGGUCAGUGGAGCAUAUAGCCAUCCGAGAUCUGUGCAUAUUGCAUAAAAAACAUGCACUC ..---...((..((....))..))((((((..(--------(((.(..((((((.....))))))..)))))))))))............((((((.((........)).)))))).. ( -28.00) >DroSec_CAF1 7312 110 + 1 UA---G-UAGUUGCUGUUUGGGUUGCUUUUUUUAUUAUUUGGUUGCUGCUGCUGCAGGGAGGCAGUGGAGCAUUUAGCCA----AGAUCUGUGCAUAUUGCAUAAAAUACAGACAGAC ..---.-......(((((((..((.............((((((((((.(..((((......))))..)))))....))))----))...(((((.....))))).))..))))))).. ( -33.10) >DroSim_CAF1 7429 110 + 1 UA---G-UAGUUGCUGUUUGGGUUGCUUUUUUUAUUAUUUGGUUGCUGCUGCUGCUGGGAGGCAGUGGAGCAUUUAGCCA----AGAUCUGUGCAGAUUGCAUAAAAUACAGACAGAC ..---.-......(((((((..((.............((((((((((.(..(((((....)))))..)))))....))))----))...(((((.....))))).))..))))))).. ( -34.40) >DroYak_CAF1 6665 105 + 1 UAGCAG-UAGUUGCUGUUUGGUUUGCUUUUU--------UGGUUGCUGUUGCUGCUGGGAGGCAGUGGAGCAUUUAGCCA----AGAUCUGUGCAGAUUGCAUAAAAUACAGACACCC .(((((-(....))))))..(((((...(((--------((((((((.(..(((((....)))))..)))))....))))----)))..(((((.....))))).....))))).... ( -33.50) >consensus UA___G_UAGUUGCUGUUUGGGUUGCUUUUUUUAU___UUGGUUGCUGCUGCUGCUGGGAGGCAGUGGAGCAUUUAGCCA____AGAUCUGUGCAGAUUGCAUAAAAUACAGACAGAC .............((((((((((((((..................(..(((((.......)))))..)))))....)))..........(((((.....))))).....))))))).. (-18.80 = -19.76 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:58 2006