Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 9,861,872 – 9,861,968 |
Length | 96 |
Max. P | 0.500000 |
Location | 9,861,872 – 9,861,968 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 86.05 |
Mean single sequence MFE | -29.12 |
Consensus MFE | -20.21 |
Energy contribution | -20.53 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.40 |
Structure conservation index | 0.69 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9861872 96 - 22224390 GCAGCCGCAAAAGCCAGUUAAAGUCUGUUAAACCAGUUAACAUGGCACUUUUGGCCAAGUUAACA--ACUGCCAGGCAGCGGGC-------GA--GAAACACGU------ACG ((..((((....(((((((((...(((......)))))))).))))...((((((..(((.....--)))))))))..))))))-------..--.........------... ( -24.90) >DroSec_CAF1 6662 102 - 1 GCAGCCGCAAAAGCCAGUUAAAGUCUGUUAAACCAGUUAACAUGGCACUUUUGGCCAAGUUAAGC--ACUGCCAGCCAGCGGGC-------GA--GAAAGACGUAAAGGCACG ...(((((....))........((((..........(((((.((((.(....))))).)))))((--.((((......))))))-------..--...)))).....)))... ( -27.50) >DroSim_CAF1 6375 102 - 1 GCAGCCGCAAAAGCCAGUUAAAGUCUGUUAAACCAGUUAACAUGGCACUUUUGGCCAAGUUAAGC--ACUGCCAGCCAGCGGGC-------GA--GAAAGACGUAAAGGCACG ...(((((....))........((((..........(((((.((((.(....))))).)))))((--.((((......))))))-------..--...)))).....)))... ( -27.50) >DroYak_CAF1 5971 113 - 1 GCAGCCGCAAAAGCCUGUUAAAGUCUGUUAAACCAGUUAACAUGGCACUUUUGGCCAAGUUAACUUGGCGGCCAGGCAGCAGGCAUCAGGCGAAAAAAACACGUUAAAGCACA ...(((......(((((((...(((((.....(((((((((.((((.(....))))).)))))).)))....))))))))))))....)))...................... ( -36.60) >consensus GCAGCCGCAAAAGCCAGUUAAAGUCUGUUAAACCAGUUAACAUGGCACUUUUGGCCAAGUUAACC__ACUGCCAGCCAGCGGGC_______GA__GAAACACGUAAAGGCACG ...(((((....(((((((((...(((......)))))))).))))....(((((..(((.......))))))))...)).)))............................. (-20.21 = -20.53 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:57 2006